Literature DB >> 31894142

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Mingxun Wang1,2, Alan K Jarmusch1, Fernando Vargas1,3, Alexander A Aksenov1, Julia M Gauglitz1, Kelly Weldon1,4, Daniel Petras1, Ricardo da Silva1, Robert Quinn1,5, Alexey V Melnik1, Justin J J van der Hooft1,6, Andrés Mauricio Caraballo-Rodríguez1, Louis Felix Nothias1, Christine M Aceves1, Morgan Panitchpakdi1, Elizabeth Brown1, Francesca Di Ottavio7, Nicole Sikora1, Emmanuel O Elijah1, Lara Labarta-Bajo3, Emily C Gentry1, Shabnam Shalapour8, Kathleen E Kyle9, Sara P Puckett10, Jeramie D Watrous11, Carolina S Carpenter4, Amina Bouslimani1, Madeleine Ernst1, Austin D Swafford4, Elina I Zúñiga3, Marcy J Balunas10, Jonathan L Klassen9, Rohit Loomba4,12, Rob Knight4,13,14, Nuno Bandeira4,14,15, Pieter C Dorrestein16,17,18,19.   

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Year:  2020        PMID: 31894142      PMCID: PMC7236533          DOI: 10.1038/s41587-019-0375-9

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


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  41 in total

Review 1.  Advancements in capturing and mining mass spectrometry data are transforming natural products research.

Authors:  Scott A Jarmusch; Justin J J van der Hooft; Pieter C Dorrestein; Alan K Jarmusch
Journal:  Nat Prod Rep       Date:  2021-11-17       Impact factor: 13.423

2.  A Convolutional Neural Network-Based Approach for the Rapid Annotation of Molecularly Diverse Natural Products.

Authors:  Raphael Reher; Hyun Woo Kim; Chen Zhang; Huanru Henry Mao; Mingxun Wang; Louis-Félix Nothias; Andres Mauricio Caraballo-Rodriguez; Evgenia Glukhov; Bahar Teke; Tiago Leao; Kelsey L Alexander; Brendan M Duggan; Ezra L Van Everbroeck; Pieter C Dorrestein; Garrison W Cottrell; William H Gerwick
Journal:  J Am Chem Soc       Date:  2020-02-21       Impact factor: 15.419

3.  Global chemical effects of the microbiome include new bile-acid conjugations.

Authors:  Robert A Quinn; Alexey V Melnik; Alison Vrbanac; Ting Fu; Kathryn A Patras; Mitchell P Christy; Zsolt Bodai; Pedro Belda-Ferre; Anupriya Tripathi; Lawton K Chung; Michael Downes; Ryan D Welch; Melissa Quinn; Greg Humphrey; Morgan Panitchpakdi; Kelly C Weldon; Alexander Aksenov; Ricardo da Silva; Julian Avila-Pacheco; Clary Clish; Sena Bae; Himel Mallick; Eric A Franzosa; Jason Lloyd-Price; Robert Bussell; Taren Thron; Andrew T Nelson; Mingxun Wang; Eric Leszczynski; Fernando Vargas; Julia M Gauglitz; Michael J Meehan; Emily Gentry; Timothy D Arthur; Alexis C Komor; Orit Poulsen; Brigid S Boland; John T Chang; William J Sandborn; Meerana Lim; Neha Garg; Julie C Lumeng; Ramnik J Xavier; Barbara I Kazmierczak; Ruchi Jain; Marie Egan; Kyung E Rhee; David Ferguson; Manuela Raffatellu; Hera Vlamakis; Gabriel G Haddad; Dionicio Siegel; Curtis Huttenhower; Sarkis K Mazmanian; Ronald M Evans; Victor Nizet; Rob Knight; Pieter C Dorrestein
Journal:  Nature       Date:  2020-02-26       Impact factor: 49.962

4.  Gestational age-dependent development of the neonatal metabolome.

Authors:  Madeleine Ernst; Simon Rogers; Ulrik Lausten-Thomsen; Anders Björkbom; Susan Svane Laursen; Julie Courraud; Anders Børglum; Merete Nordentoft; Thomas Werge; Preben Bo Mortensen; David M Hougaard; Arieh S Cohen
Journal:  Pediatr Res       Date:  2020-09-17       Impact factor: 3.756

5.  A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis.

Authors:  Tae Gyu Oh; Susy M Kim; Cyrielle Caussy; Ting Fu; Jian Guo; Shirin Bassirian; Seema Singh; Egbert V Madamba; Ricki Bettencourt; Lisa Richards; Ruth T Yu; Annette R Atkins; Tao Huan; David A Brenner; Claude B Sirlin; Michael Downes; Ronald M Evans; Rohit Loomba
Journal:  Cell Metab       Date:  2020-06-30       Impact factor: 27.287

6.  Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater.

Authors:  Daniel Petras; Jeremiah J Minich; Lucia B Cancelada; Ralph R Torres; Emily Kunselman; Mingxun Wang; Margot E White; Eric E Allen; Kimberly A Prather; Lihini I Aluwihare; Pieter C Dorrestein
Journal:  Chemosphere       Date:  2021-01-02       Impact factor: 7.086

Review 7.  New software tools, databases, and resources in metabolomics: updates from 2020.

Authors:  Biswapriya B Misra
Journal:  Metabolomics       Date:  2021-05-11       Impact factor: 4.290

Review 8.  Heterologous production of cyanobacterial compounds.

Authors:  Dipesh Dhakal; Manyun Chen; Hendrik Luesch; Yousong Ding
Journal:  J Ind Microbiol Biotechnol       Date:  2021-06-04       Impact factor: 4.258

9.  Nontargeted mass spectrometry of dried blood spots for interrogation of the human circulating metabolome.

Authors:  Casey Ward; Shriram Nallamshetty; Jeramie D Watrous; Eowyn Acres; Tao Long; Ian T Mathews; Sonia Sharma; Susan Cheng; Farhad Imam; Mohit Jain
Journal:  J Mass Spectrom       Date:  2021-05-27       Impact factor: 2.394

10.  Studying Autism Using Untargeted Metabolomics in Newborn Screening Samples.

Authors:  Julie Courraud; Madeleine Ernst; Susan Svane Laursen; David M Hougaard; Arieh S Cohen
Journal:  J Mol Neurosci       Date:  2021-01-30       Impact factor: 3.444

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