Literature DB >> 31891872

Mannosidase mechanism: at the intersection of conformation and catalysis.

Carme Rovira1, Alexandra Males2, Gideon J Davies2, Spencer J Williams3.   

Abstract

Mannosidases are a diverse group of enzymes that are important in the biological processing of mannose-containing polysaccharides and complex glycoconjugates. They are found in 12 of the >160 sequence-based glycosidase families. We discuss evidence that nature has evolved a small set of common mechanisms that unite almost all of these mannosidase families. Broadly, mannosidases (and the closely related rhamnosidases) perform catalysis through just two conformations of the oxocarbenium ion-like transition state: a B2,5 (or enantiomeric 2,5B) boat and a 3H4 half-chair. This extends to a new family (GT108) of GDPMan-dependent β-1,2-mannosyltransferases/phosphorylases that perform mannosyl transfer through a boat conformation as well as some mannosidases that are metalloenzymes and require divalent cations for catalysis. Yet, among this commonality lies diversity. New evidence shows that one unique family (GH99) of mannosidases use an unusual mechanism involving anchimeric assistance via a 1,2-anhydro sugar (epoxide) intermediate.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 31891872     DOI: 10.1016/j.sbi.2019.11.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  8 in total

1.  Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota.

Authors:  Matthew P Ostrowski; Sabina Leanti La Rosa; Benoit J Kunath; Andrew Robertson; Gabriel Pereira; Live H Hagen; Neha J Varghese; Ling Qiu; Tianming Yao; Gabrielle Flint; James Li; Sean P McDonald; Duna Buttner; Nicholas A Pudlo; Matthew K Schnizlein; Vincent B Young; Harry Brumer; Thomas M Schmidt; Nicolas Terrapon; Vincent Lombard; Bernard Henrissat; Bruce Hamaker; Emiley A Eloe-Fadrosh; Ashootosh Tripathi; Phillip B Pope; Eric C Martens
Journal:  Nat Microbiol       Date:  2022-04-01       Impact factor: 17.745

2.  GH47 and Other Glycoside Hydrolases Catalyze Glycosidic Bond Cleavage with the Assistance of Substrate Super-arming at the Transition State.

Authors:  Jonathan C K Quirke; David Crich
Journal:  ACS Catal       Date:  2021-08-04       Impact factor: 13.700

3.  Glycosyl Oxocarbenium Ions: Structure, Conformation, Reactivity, and Interactions.

Authors:  Antonio Franconetti; Ana Ardá; Juan Luis Asensio; Yves Blériot; Sébastien Thibaudeau; Jesús Jiménez-Barbero
Journal:  Acc Chem Res       Date:  2021-04-30       Impact factor: 22.384

4.  A Shut-and-Open Case: An Epoxide Intermediate Spotted in the Reaction Coordinate of a Family of Glycoside Hydrolases.

Authors:  David J Vocadlo
Journal:  ACS Cent Sci       Date:  2020-05-06       Impact factor: 14.553

5.  Structure and function of Bs164 β-mannosidase from Bacteroides salyersiae the founding member of glycoside hydrolase family GH164.

Authors:  Zachary Armstrong; Gideon J Davies
Journal:  J Biol Chem       Date:  2019-12-22       Impact factor: 5.157

6.  Synthesis of broad-specificity activity-based probes for exo-β-mannosidases.

Authors:  Nicholas G S McGregor; Chi-Lin Kuo; Thomas J M Beenakker; Chun-Sing Wong; Wendy A Offen; Zachary Armstrong; Bogdan I Florea; Jeroen D C Codée; Herman S Overkleeft; Johannes M F G Aerts; Gideon J Davies
Journal:  Org Biomol Chem       Date:  2022-01-26       Impact factor: 3.876

Review 7.  Computer Simulation to Rationalize "Rational" Engineering of Glycoside Hydrolases and Glycosyltransferases.

Authors:  Joan Coines; Irene Cuxart; David Teze; Carme Rovira
Journal:  J Phys Chem B       Date:  2022-01-24       Impact factor: 2.991

8.  NMR Spectroscopic Characterization of the C-Mannose Conformation in a Thrombospondin Repeat Using a Selective Labeling Approach.

Authors:  Hendrik R A Jonker; Krishna Saxena; Aleksandra Shcherbakova; Birgit Tiemann; Hans Bakker; Harald Schwalbe
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-03       Impact factor: 15.336

  8 in total

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