| Literature DB >> 31889938 |
Olivier Lassout1,2, Ralf Hartmer3, Wolfgang Jabs3, Lorella Clerici2, Yury O Tsybin4, Kaveh Samii2,5, Nicolas Vuilleumier1,2, Denis Hochstrasser1,2, Alexander Scherl1,2, Pierre Lescuyer1,2, Didia Coelho Graça1,2.
Abstract
BACKGROUND: Biological diagnosis of hemoglobin disorders is a complex process relying on the combination of several analytical techniques to identify Hb variants in a particular sample. Currently, hematology laboratories usually use high-performance liquid chromatography (HPLC), capillary electrophoresis and gel-based methods to characterize Hb variants. Co-elution and co-migration may represent major issues for precise identification of Hb variants, even for the most common ones such as Hb S and C.Entities:
Keywords: ETD; Electron transfer dissociation; Hemoglobin; Hemoglobin disorders; Hemoglobin variant; Intact protein; SRM; Selected reaction monitoring; Top-down
Year: 2019 PMID: 31889938 PMCID: PMC6915975 DOI: 10.1186/s12014-019-9261-1
Source DB: PubMed Journal: Clin Proteomics ISSN: 1542-6416 Impact factor: 3.988
CEX-HPLC and TD SRM ETD method comparison results
Isolation parameters for α chain, Hb A and Hb S β chains. Hb C, Hb E, Hb D-Punjab and Hb O-Arab isolation is based on the same parameters as Hb A β chain
| Chain | Charge state | First isolation step | Second isolation step | ||
|---|---|---|---|---|---|
| Precursor ion | Isolation width | Precursor ion | Isolation width | ||
| βS | [M+19H]19+ | 837 | 11.5 | 835.3 | 2.5 |
| β | [M+19H]19+ | 837 | 11.5 | 837 | 3 |
| α | [M+18H]18+ | 841.9 | 12.5 | 841.9 | 2.5 |
Hb C, Hb E, Hb D-Punjab and Hb O-Arab isolation is based on the same parameters as Hb A β chain
SRM-ETD transition list for specific α chain and Hb A, Hb C, Hb S and Hb E β chains identification
| Chain | Precursor ion ( | Product ions | |||||
|---|---|---|---|---|---|---|---|
| ion | ( | ion | ( | ion | ( | ||
| α | 841.9 | 600.3 | 728.4 | 829.5 | |||
| β | 837 | 694.4 | 823.4 | 951.5 | |||
| βC | 837 | 693.4 | 822.5 | 950.6 | |||
| βS | 835.3 | 664.4 | 793.5 | 921.5 | |||
| βE | 837 | 921.6 | |||||
Fig. 1Complete workflow of the SRM ETD method. a Sample preparation protocol. b Scheme of the data acquisition by TD SRM ETD method and data analysis. Specific EIC for α chain, βA chain, βS chain, βC chain, βE chain. For each chain, the mean pic intensity is obtained and chain ratio is calculated. The detection of each chain is based on a color code and a cut-off value
Repeatability and reproducibility study results
| Reproducibility | Repeatability | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Sample | A/A | S/S | C/C | A/E | A/A | S/S | A/C | A/E | |||
| Chains | βA (%) | βS (%) | βC (%) | βA (%) | βE (%) | βA (%) | βS (%) | βA (%) | βC (%) | βA (%) | βE (%) |
| 1 | |||||||||||
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| 6 | 7 | ||||||||||
| 7 | 7 | ||||||||||
| 8 | 7 | ||||||||||
| 9 | 7 | ||||||||||
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| 12 | 8 | ||||||||||
| 13 | 8 | ||||||||||
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| 15 | 7 | ||||||||||
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| 19 | 9 | ||||||||||
| 20 | |||||||||||
| 81 | 83 | 63 | 63 | 27 | 84 | 95 | 47 | 48 | 79 | 10 | |
| 8 | 3 | 5 | 5 | 5 | 4 | 3 | 4 | 4 | 5 | 3 | |
| 10 | 3 | 8 | 8 | 19 | 5 | 3 | 7 | 9 | 6 | 28 | |
Italic values indicate positive results
Fig. 2Results of CEX-HPLC method and corresponding TD SRM ETD method for two samples are presented. a Results of heterozygote Hb S sample. On top, results table and chromatogram are presented. Hb A is detected at 52%, 1.734 min of RT and Hb S is detected at 36.8%, 3.439 min of RT. The corresponding peaks in the chromatogram are highlighted by a red box. On bottom, TD SRM ETD results are presented in a table for Hb A, Hb S, Hb C and Hb E chains ratio and color code results. If the targeted Hb is present, the corresponding box is green. Hb A and S are detected with a ratio of 63% and 29% respectively (green boxes). b Results of homozygote Hb S sample. On top, results table and chromatogram are presented. Hb A is detected at 1.4%, 1.773 min of RT and Hb S is detected at 83.9%, 3.380 min of RT. The corresponding peaks in the chromatogram are highlighted by a red box. On bottom, TD SRM ETD results are presented in a table for Hb A, Hb S, Hb C and Hb E chains ratio and color code result. If the targeted Hb is present, the corresponding box is green. Only Hb S is detected with a ratio of 93% (green box)