Literature DB >> 31888402

Mechanism of long noncoding RNAs as transcriptional regulators in cancer.

Yan Huang1,2, Qi Guo1,2, Xi-Ping Ding1, Xiangting Wang1,2.   

Abstract

Dysregulation of gene expression, often interpreted by gene transcription as an endpoint response, is tightly associated with human cancer. Long noncoding RNAs (lncRNAs), derived from the noncoding elements in the genome and appeared no less than 200nt in length, have emerged as a novel class of pivotal regulatory component. Recently, great attention has been paid to the cancer-related lncRNAs and growing evidence have shown that lncRNAs act as key transcriptional regulators in cancer cells through diverse mechanisms. Here, we focus on the nucleus-expressed lncRNAs and summarize their molecular mechanisms in transcriptional control during tumorigenesis and cancer metastasis. Six major mechanisms will be discussed in this review: association with transcriptional factor, modulating DNA methylation or histone modification enzyme, influencing on chromatin remodelling complex, facilitating chromosomal looping, interaction with RNA polymerase and direct association with promoter.

Entities:  

Keywords:  Cancer; Long noncoding RNA; Transcription

Year:  2020        PMID: 31888402      PMCID: PMC7567497          DOI: 10.1080/15476286.2019.1710405

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  161 in total

1.  Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers.

Authors:  Yue Gao; Peng Wang; Yanxia Wang; Xueyan Ma; Hui Zhi; Dianshuang Zhou; Xin Li; Ying Fang; Weitao Shen; Yingqi Xu; Shipeng Shang; Lihua Wang; Li Wang; Shangwei Ning; Xia Li
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

2.  The Long Noncoding RNA Cancer Susceptibility 9 and RNA Binding Protein Heterogeneous Nuclear Ribonucleoprotein L Form a Complex and Coregulate Genes Linked to AKT Signaling.

Authors:  Marcel Klingenberg; Matthias Groß; Ashish Goyal; Maria Polycarpou-Schwarz; Thilo Miersch; Anne-Sophie Ernst; Jörg Leupold; Nitin Patil; Uwe Warnken; Heike Allgayer; Thomas Longerich; Peter Schirmacher; Michael Boutros; Sven Diederichs
Journal:  Hepatology       Date:  2018-10-12       Impact factor: 17.425

Review 3.  Molecular mechanisms of long noncoding RNAs.

Authors:  Kevin C Wang; Howard Y Chang
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

4.  Epigenetic Regulation of NAMPT by NAMPT-AS Drives Metastatic Progression in Triple-Negative Breast Cancer.

Authors:  Hanwen Zhang; Ning Zhang; Ying Liu; Peng Su; Yiran Liang; Yaming Li; Xiaolong Wang; Tong Chen; Xiaojin Song; Yuting Sang; Yi Duan; Jiashu Zhang; Lijuan Wang; Bing Chen; Wenjing Zhao; Haiyang Guo; Zhaojian Liu; Guohong Hu; Qifeng Yang
Journal:  Cancer Res       Date:  2019-04-02       Impact factor: 12.701

5.  An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.

Authors:  Christine M Clemson; John N Hutchinson; Sergio A Sara; Alexander W Ensminger; Archa H Fox; Andrew Chess; Jeanne B Lawrence
Journal:  Mol Cell       Date:  2009-02-12       Impact factor: 17.970

6.  A p53-bound enhancer region controls a long intergenic noncoding RNA required for p53 stress response.

Authors:  C A Melo; N Léveillé; K Rooijers; P J Wijchers; G Geeven; A Tal; S A Melo; W de Laat; R Agami
Journal:  Oncogene       Date:  2016-01-18       Impact factor: 9.867

7.  The long noncoding RNA GAS8-AS1 suppresses hepatocarcinogenesis by epigenetically activating the tumor suppressor GAS8.

Authors:  Wenting Pan; Nasha Zhang; Wenjuan Liu; Jibing Liu; Liqing Zhou; Yang Liu; Ming Yang
Journal:  J Biol Chem       Date:  2018-09-18       Impact factor: 5.157

8.  p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes.

Authors:  Michal Krawczyk; Beverly M Emerson
Journal:  Elife       Date:  2014-04-29       Impact factor: 8.140

9.  Targeting the Notch-regulated non-coding RNA TUG1 for glioma treatment.

Authors:  Keisuke Katsushima; Atsushi Natsume; Fumiharu Ohka; Keiko Shinjo; Akira Hatanaka; Norihisa Ichimura; Shinya Sato; Satoru Takahashi; Hiroshi Kimura; Yasushi Totoki; Tatsuhiro Shibata; Mitsuru Naito; Hyun Jin Kim; Kanjiro Miyata; Kazunori Kataoka; Yutaka Kondo
Journal:  Nat Commun       Date:  2016-12-06       Impact factor: 14.919

10.  Ets-1 promoter-associated noncoding RNA regulates the NONO/ERG/Ets-1 axis to drive gastric cancer progression.

Authors:  Dan Li; Yajun Chen; Hong Mei; Wanju Jiao; Huajie Song; Lin Ye; Erhu Fang; Xiaojing Wang; Feng Yang; Kai Huang; Liduan Zheng; Qiangsong Tong
Journal:  Oncogene       Date:  2018-05-18       Impact factor: 9.867

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  13 in total

1.  Identification of glycolysis-associated long non-coding RNA regulatory subtypes and construction of prognostic signatures by transcriptomics for bladder cancer.

Authors:  Chenyu Mao; Yuan Gao; Mingyu Wan; Nong Xu
Journal:  Funct Integr Genomics       Date:  2022-04-14       Impact factor: 3.674

2.  Upregulated Long Non-Coding RNA LL22NC03-N64E9.1 Promotes the Proliferation and Migration of Human Breast Cancer Cells by Silencing Kruppel-Like Factor 2 Expression.

Authors:  Weibin Lian; Xiaohua Jiang; Liangqiang Li; Qinglan Wang; Chengye Hong; Peidong Yang; Debo Chen
Journal:  Cancer Manag Res       Date:  2020-10-29       Impact factor: 3.989

3.  TMPO-AS1, a Novel E2F1-Regulated lncRNA, Contributes to the Proliferation of Lung Adenocarcinoma Cells via Modulating miR-326/SOX12 Axis.

Authors:  Lin Wei; Yugang Liu; Huijun Zhang; Yuefeng Ma; Zenghui Lu; Zhenning Gu; Chao Ding
Journal:  Cancer Manag Res       Date:  2020-12-02       Impact factor: 3.989

Review 4.  Circular RNAs and Their Role in Exosomes.

Authors:  Zeping Han; Huafang Chen; Zhonghui Guo; Jian Shen; Wenfeng Luo; Fangmei Xie; Yu Wan; Shengbo Wang; Jianhao Li; Jinhua He
Journal:  Front Oncol       Date:  2022-04-28       Impact factor: 5.738

Review 5.  RNA and liquid-liquid phase separation.

Authors:  Qi Guo; Xiangmin Shi; Xiangting Wang
Journal:  Noncoding RNA Res       Date:  2021-04-28

6.  Identification and validation of a novel eight mutant-derived long non-coding RNAs signature as a prognostic biomarker for genome instability in low-grade glioma.

Authors:  Aierpati Maimaiti; Xixian Wang; Yinan Pei; Nuerbiye Nuermaimaiti; Abudireheman Tuersunniyazi; Yaeraili Abula; Zhaohai Feng; Lei Jiang; Xin Shi; Maimaitijiang Kasimu
Journal:  Aging (Albany NY)       Date:  2021-06-03       Impact factor: 5.682

7.  7SK Acts as an Anti-tumor Factor in Tongue Squamous Cell Carcinoma.

Authors:  Bowen Zhang; Sainan Min; Qi Guo; Yan Huang; Yuzhu Guo; Xiaolin Liang; Li-Ling Wu; Guang-Yan Yu; Xiangting Wang
Journal:  Front Genet       Date:  2021-04-01       Impact factor: 4.599

8.  A pair of long intergenic non-coding RNA LINC00887 variants act antagonistically to control Carbonic Anhydrase IX transcription upon hypoxia in tongue squamous carcinoma progression.

Authors:  Tao Shen; Wangxiao Xia; Sainan Min; Zixuan Yang; Lehua Cheng; Wei Wang; Qianxi Zhan; Fanghong Shao; Xuehan Zhang; Zhiyu Wang; Yan Zhang; Guodong Shen; Huafeng Zhang; Li-Ling Wu; Guang-Yan Yu; Qing-Peng Kong; Xiangting Wang
Journal:  BMC Biol       Date:  2021-09-07       Impact factor: 7.431

9.  Comprehensive Analysis of Subtypes and Identification of Key lncRNAs Based on Glutamine Metabolism-Related Long Noncoding RNAs.

Authors:  Yuwei Feng; Xiaowei Sun; Tiangu Yang; Jingqi Han; Dapeng Zhou; Haitao Ren; Yulong Sheng; Yanhua Wang
Journal:  Comput Math Methods Med       Date:  2022-04-29       Impact factor: 2.238

10.  Web tools to perform long non-coding RNAs analysis in oncology research.

Authors:  Shixing Gu; Guangjie Zhang; Qin Si; Jiawen Dai; Zhen Song; Yingshuang Wang
Journal:  Database (Oxford)       Date:  2021-07-23       Impact factor: 3.451

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