| Literature DB >> 31887551 |
Wei Zhao1, Xiaoqian Qi1, Lina Liu2, Shiqing Ma3, Jingwen Liu4, Jie Wu5.
Abstract
N6-methyladenosine (m6A) is the most prevalent internal RNA modification, especially within eukaryotic messenger RNAs (mRNAs). m6A modifications of RNA regulate splicing, translocation, stability, and translation into proteins. m6A modifications are catalyzed by RNA methyltransferases, such as METTL3, METTL14, and WTAP (writers); the modifications are removed by the demethylases fat mass and obesity-associated protein (FTO) and ALKBH5 (ALKB homolog 5) (erasers); and the modifications are recognized by m6A-binding proteins, such as YTHDF domain-containing proteins and IGF2BPs (readers). Abnormal changes in the m6A levels of these genes are closely related to tumor occurrence and development. In this paper, we review the role of m6A in human cancer and summarize its prospective applications in cancer.Entities:
Keywords: N6-methyladenosine; RNA methylation; cancer; epigenetic; m(6)A
Year: 2019 PMID: 31887551 PMCID: PMC6938965 DOI: 10.1016/j.omtn.2019.11.022
Source DB: PubMed Journal: Mol Ther Nucleic Acids ISSN: 2162-2531 Impact factor: 8.886
Figure 1A Schematic Diagram Illustrates the Molecular Mechanisms and Functions of m6A Methylation
Complexes formed by METTL3, METTL14, WTAP, RBM15, and METTL16 are named writers. ALKBH5 and FTO are common erasers. YTHDC1, YTHDF1, and YTHDF3 are common readers. Different readers binding to m6A sites can produce different biological effects.
Methods for Detection and Prediction of m6A Methylation
| Methods | Features |
|---|---|
| m6A-Seq | high throughput |
| MeRIP-seq | high throughput |
| m6A-LAIC-seq | high throughput, precise |
| PA-m6A-Seq | high throughput, single site |
| miCLIP | high throughput, single site |
| m6A-CLIP | high throughput, single site |
| SCARLET | high throughput, single site |
| MAZTER-seq | high throughput, single site |
| RNAmod | high throughput, single site |
| FunDMDeep-m6A | high throughput, single site |
| DART-seq | high throughput, single site |
| RNA sequencing | high throughput, single site |
| m6A-REF-seq | high throughput, single site |
| HMM | database |
| pRNAm-PC | database |
| iRNA-Methyl | database |
| RNA-methylPred | database |
| TargetM6A | database |
| SRAMP | database |
| RMbase-v2.0 | database |
| DART-seq | database |
m6A Methylation-Related Tumor
| Related Proteins that Encode Genes | Trend | Cancer | Regulatory Gene |
|---|---|---|---|
| METTL3 | ↑ | leukemia | |
| ↑ | hepatoma | ||
| ↑ | bladder cancer | ||
| ↓ | glioblastoma | ||
| ↑ | colorectal carcinoma | ||
| METTL14 | ↑ | leukemia | |
| ↓ | glioblastoma | ||
| WTAP | ↑ | hepatoma | |
| FTO | ↑ | leukemia | |
| ↑ | cervical carcinoma | β | |
| ↑ | melanoma | autophagy and NF-κB pathway | |
| ALKBH5 | ↑ | breast carcinoma | |
| YTHDF1 | ↑ | colorectal cancer | |
| ↑ | hepatoma | ||
| YTHDF2 | ↑ | hepatoma | |
| ↑ | AML | ||