Literature DB >> 31886874

Corrigendum to: Rice Galaxy: an open resource for plant science.

Venice Juanillas, Alexis Dereeper, Nicolas Beaume, Gaetan Droc, Joshua Dizon, John Robert Mendoza, Jon Peter Perdon, Locedie Mansueto, Lindsay Triplett, Jillian Lang, Gabriel Zhou, Kunalan Ratharanjan, Beth Plale, Jason Haga, Jan E Leach, Manuel Ruiz, Michael Thomson, Nickolai Alexandrov, Pierre Larmande, Tobias Kretzschmar, Ramil P Mauleon.   

Abstract

Entities:  

Year:  2019        PMID: 31886874      PMCID: PMC6936208          DOI: 10.1093/gigascience/giz156

Source DB:  PubMed          Journal:  Gigascience        ISSN: 2047-217X            Impact factor:   6.524


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In the original version of the article “Rice Galaxy: an open resource for plant science” by Venice Juanillas et al. [1], the main publication that generated the genome assemblies mentioned as important datasources in paper (IR 8: GenBank: MPPV00000000.1 and N 22: GenBank: LWDA00000000.1) was not included in the reference. In the online version of the paper, this occurs in the Discussion/Built-in/interoperable rice data section in the following sentence (highlighted in BOLD font): “These include 4 high-quality builds from indica-type varieties Minghui 63 and Zhengshan 97 [22], IR 8 (GenBank: , Shuhui 498 [23], as well as the aus-type variety N 22 (GenBank: , as well as 4 medium- to low-quality genomes, 2 indica (IR 64 [24] and 93–11 [25]) and 2 aus-type rice genomes (DJ 123 [24] and Kasalath [26]).” These two genomes should be cited using the reference indicated below[2] as reference 23, and we have apologized to the corresponding authors of this work and committed to them to make efforts to rectify this oversight. Following the sequence of references cited in the MS, it should now be written as (again highlighted in BOLD font: “These include 4 high-quality builds from indica-type varieties Minghui 63 and Zhengshan 97 [22], IR 8 [23], Shuhui 498 [24], as well as the aus-type variety N 22 [23], as well as 4 medium- to low-quality genomes, 2 indica (IR 64 [25] and 93–11 [26]) and 2 aus-type rice genomes (DJ 123 [25] and Kasalath [27]).” The authors sincerely apologize for these oversights.
  2 in total

1.  Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.

Authors:  Joshua C Stein; Yeisoo Yu; Dario Copetti; Derrick J Zwickl; Li Zhang; Chengjun Zhang; Kapeel Chougule; Dongying Gao; Aiko Iwata; Jose Luis Goicoechea; Sharon Wei; Jun Wang; Yi Liao; Muhua Wang; Julie Jacquemin; Claude Becker; Dave Kudrna; Jianwei Zhang; Carlos E M Londono; Xiang Song; Seunghee Lee; Paul Sanchez; Andrea Zuccolo; Jetty S S Ammiraju; Jayson Talag; Ann Danowitz; Luis F Rivera; Andrea R Gschwend; Christos Noutsos; Cheng-Chieh Wu; Shu-Min Kao; Jhih-Wun Zeng; Fu-Jin Wei; Qiang Zhao; Qi Feng; Moaine El Baidouri; Marie-Christine Carpentier; Eric Lasserre; Richard Cooke; Daniel da Rosa Farias; Luciano Carlos da Maia; Railson S Dos Santos; Kevin G Nyberg; Kenneth L McNally; Ramil Mauleon; Nickolai Alexandrov; Jeremy Schmutz; Dave Flowers; Chuanzhu Fan; Detlef Weigel; Kshirod K Jena; Thomas Wicker; Mingsheng Chen; Bin Han; Robert Henry; Yue-Ie C Hsing; Nori Kurata; Antonio Costa de Oliveira; Olivier Panaud; Scott A Jackson; Carlos A Machado; Michael J Sanderson; Manyuan Long; Doreen Ware; Rod A Wing
Journal:  Nat Genet       Date:  2018-01-22       Impact factor: 38.330

2.  Rice Galaxy: an open resource for plant science.

Authors:  Venice Juanillas; Alexis Dereeper; Nicolas Beaume; Gaetan Droc; Joshua Dizon; John Robert Mendoza; Jon Peter Perdon; Locedie Mansueto; Lindsay Triplett; Jillian Lang; Gabriel Zhou; Kunalan Ratharanjan; Beth Plale; Jason Haga; Jan E Leach; Manuel Ruiz; Michael Thomson; Nickolai Alexandrov; Pierre Larmande; Tobias Kretzschmar; Ramil P Mauleon
Journal:  Gigascience       Date:  2019-05-01       Impact factor: 6.524

  2 in total
  1 in total

1.  Perspective: 50 years of plant chromosome biology.

Authors:  Richard B Flavell
Journal:  Plant Physiol       Date:  2021-04-02       Impact factor: 8.340

  1 in total

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