| Literature DB >> 31886209 |
Hana Saoud1, Oumaima Inoubli1, Sihem Ben Fredj2, Mohsen Hassine3, Bochra Ben Mohamed4, Lotfi Gaha4, Besma Bel Hadj Jrad1.
Abstract
While cytokines and their genetic variants have been intensively studied in schizophrenia, little attention has been focused on chemokines in the last years. The monocyte chemoattractant protein 1 (MCP-1) is known to attract peripheral monocytes to the brain during an inflammatory reaction and to affect the T helper (Th) cell development by stimulating Th2 polarization. Owing to the neuroinflammation in schizophrenia and the variable level of MCP-1 in these patients' sera, we proposed to analyze the impact of functional genetic variants of the MCP-1 gene (MCP-1-2518A/G (rs1024611), MCP-1-362G/C (rs2857656), and MCP-1 int1del554-567 (rs3917887)) in schizophrenic patients. We conducted a case-control study on a Tunisian population composed of 200 patients and 200 controls using RFLP-PCR. Our results indicated that the minor alleles (-2518G and Del554-567) were significantly more prevalent in controls than in patients (P=0.001/adjusted OR = 0.42, P=0.04/adjusted OR = 0.64), whereas, for -362C minor allele, increased risk of schizophrenia was revealed (P=0.001, adjusted OR = 2.38). In conclusion, we have identified the haplotype combination -2581G/-362G/int1del554-567 that could mediate protection against schizophrenia (P=0.0038, OR = 0.19) and the effect could result more strongly from the MCP-1 -2582G with -362G variants, whereas the effect of int1del554-567 may in part be explained by its LD with -362.Entities:
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Year: 2019 PMID: 31886209 PMCID: PMC6925699 DOI: 10.1155/2019/4042615
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Primers, fragment patterns, and enzymes used for RFLP analysis.
| Polymorphisms | Primers (5′–3′) | Amplicon sizes (bp) | Restriction enzymes |
|---|---|---|---|
| -2518A/G (rs1024611) |
| 182,54 |
|
|
| |||
| 362C/G (rs2857656) |
| 201,110 |
|
|
| |||
| CCL2I/D (rs3917887) |
| I:202 | — |
F: forward primer; R: reverse primer; I: insertion; D: deletion. In order to ratify the data generated by the PCR-RFPL method, we analyzed 25% of the samples randomly.
Genotype distribution and allele frequencies of MCP-1 polymorphisms in healthy controls and patients with Schizophrenia.
| Genotype | Healthy controls | Patients | OR (95% CI) |
| AIC |
|---|---|---|---|---|---|
| MCP-1 -2518A/G (rs1024611) | |||||
| Genotypes | |||||
| AA | 124 (62%) | 166 (83%) | |||
| AG | 69 (34.5%) | 33 (16.5%) | 0.35 (0.22–0.57) | 0.000015 | |
| GG | 7 (3.5%) | 1 (0.5%) | 0.10 (0.004–0.7) | 0.015 | 536.4 |
| Dominant (AA vs AG + GG) | 0.33 (0.20–0.53) | 0.0000023 | 536 | ||
| Recessive (AA + AG vs GG) | 0.13 (0.006–0.9) | 0.067 | 553.4 | ||
| HWEa | 0.48 | 0.22 | |||
| Alleles | |||||
| A | 317 (79.25%) | 365 (91.25%) | |||
| G | 83 (20.75%) | 35 (8.75%) | 0.36 (0.23–0.55) | 0.000001 | |
| MCP-1 -362 G/C (rs2857656) | |||||
| Genotypes | |||||
| GG | 67 (33.5%) | 46 (23%) | |||
| GC | 92 (46%) | 88 (44%) | 1.3 (0.86–2.24) | 0.17 | |
| CC | 41 (20.5%) | 66 (33%) | 2.33 (1.36–4.03) | 0.001 | 552.4 |
| Dominant (GG vs GC + CC) | 1.68 (1.08–2.63) | 0.02 | 554.8 | ||
| Recessive (GG + GC vs CC) | 1.9 (1.21–3.01) | 0.004 | 552 | ||
| HWEa | 0.82 | 2.46 | |||
| Alleles | |||||
| G | 226 (56.5%) | 180 (45%) | |||
| C | 174 (43.5%) | 220 (55%) | 1.58 (1.2–2.09) | 0.001 | |
| MCP-1 int1del554-567 (rs3917887) | |||||
| Genotypes | |||||
| Ins/Ins | 136 (68%) | 154 (77%) | |||
| Ins/Del | 59 (29.5%) | 41 (20.5%) | 0.61 (0.38–0.97) | 0.03 | |
| Del/Del | 5 (2.5%) | 5 (2.5%) | 0.88 (0.23–3.3) | 0.8 | 553.1 |
| Dominant (Ins/Ins vs Ins/Del + Del/Del) | — | — | 0.63 (0.4–0.98) | 0.04 | 551.4 |
| Recessive (Ins/Ins + Ins/Del vs Del/Del) | — | — | 1 (0.26–3.77) | >0.99 | 555.7 |
| HWEa | 0.22 | 1.23 | |||
| Alleles | |||||
| Ins | 331 (82.75%) | 349 (87.25%) | |||
| Del | 69 (17.25%) | 51 (12.75%) | 0.7 (0.47–1.03) | 0.075 | |
OR: odds ratio; CI: confidence interval; HC: healthy controls; P < 0.05; HWE: Hardy–Weinberg equilibrium; aChi-square value AIC (Akaike information criterion) provides a means for model selection.
Figure 1Linkage disequilibrium (LD) map of the three MCP-1 SNPs genotyped using Haploview. The positions of the tested variants are indicated above the Haploview output. The LD between specific pairs of MCP-1 SNPs is displayed by the color scheme, which represents LD relationships, based on D′ values (linkage coefficient according to Lewontin) multiplied by 100. Bright red squares illustrate high LD, squares in shades of pink/red reveal moderate LD, and white squares indicate no statistically significant difference of LD.
Haplotype analysis of MCP-1 polymorphisms in patients with schizophrenia and control subjects.
| CCL2 haplotypes | Percent haplotype frequencies | OR (95% CI) |
| |
|---|---|---|---|---|
| SCZ cases | HC | |||
| A-G-Ins | 41.6 | 37.86 | 1 | — |
| A-C-Ins | 40.82 | 28.09 | 1.28 (0.86–1.91) | 0.23 |
| G-G-Ins | 2.48 | 12.96 | 0.19 (0.06–0.59) | 0.0038 |
| A-C-Del | 7.91 | 7.38 | 1.00 (0.49–2.03) | 1 |
P < 0.05.