| Literature DB >> 31886162 |
Lin Li1, Xue Zhang1, Zhong-Ti Zhang2.
Abstract
BACKGROUND: The role of RAD51 gene polymorphisms with the development of head and neck cancer (HNC) and esophageal cancer (EC) remains controversial. This meta-analysis was conducted to evaluate the correlation between the RAD51 polymorphisms and these two cancers quantitatively.Entities:
Year: 2019 PMID: 31886162 PMCID: PMC6915143 DOI: 10.1155/2019/2789035
Source DB: PubMed Journal: Int J Genomics ISSN: 2314-436X Impact factor: 2.326
Figure 1The progress of study selection.
The detailed characteristics of included studies.
| First name (year) | Country | Ethnicity | Control type | Sample size cases/controls | Genotyping method | Cancer type |
|---|---|---|---|---|---|---|
| Lu (2007) | USA | Caucasian | HCC | 716/719 | PCR-RFLP | HNC |
| Werbrouck (2008) | Belgium | Caucasian | HCC | 152/157 | PCR | HNC |
| Sliwinski (2010) | Poland | Caucasian | HCC | 191/353 | PCR-RFLP | HNC |
| Gresner (2012) | Poland | Caucasian | PCC | 81/111 | PCR | HNC |
| Romanowicz-Makowska (2012) | Poland | Caucasian | PCC | 253/253 | PCR-RFLP | HNC |
| Xue-Jiao (2013) | China | Asian | HCC | 123/61 | PCR-RFLP | EC |
| Shu-Xiang (2014) | China | Asian | PCC | 316/316 | PCR-RFLP | EC |
| Kayani (2014) | Pakistan | Asian | HCC | 200/150 | PCR-RFLP | HNC |
| Ming-Zhong (2014) | China | Asian | HCC | 219/258 | PCR-RFLP | EC |
| Santos (2018) | Brazil | Unknown | HCC | 126/130 | TaqMan | HNC |
HCC: hospital-based case control; PCC: population-based case control; PCR: polymerase chain reaction; RFLP: restriction fragment length polymorphism.
Characteristics of included studies for RAD51 polymorphisms.
| SNP | First name (year) | Cases (GG/GC/CC) | Controls (GG/GC/CC) | Cases (G/C-allele) | Controls (G/C-allele) |
| NOS score |
| 135G/C | Lu (2007) | 624/91/1 | 622/96/1 | 1339/93 | 1340/98 | 0.170 | 7 |
| Werbrouck (2008) | 136/15/1 | 134/23/0 | 287/17 | 291/23 | 0.322 | 7 | |
| Sliwinski (2010) | 101/88/2 | 258/64/32 | 290/92 | 580/128 | <0.001 | 8 | |
| Gresner (2012) | 67/13/1 | 71/14/2 | 147/15 | 156/18 | 0.217 | 8 | |
| Romanowicz-Makowska (2012) | 174/69/10 | 190/58/5 | 417/89 | 438/68 | 0.816 | 7 | |
| Xue-Jiao (2013) | 83/35/5 | 54/6/1 | 201/45 | 114/8 | 0.123 | 6 | |
| Shu-Xiang (2014) | 206/100/10 | 216/92/8 | 512/120 | 524/108 | 0.626 | 7 | |
| Kayani (2014) | 120/70/10 | 106/41/3 | 310/90 | 253/47 | 0.674 | 7 | |
| Ming-Zhong (2014) | 144/56/19 | 223/24/11 | 344/94 | 470/46 | <0.001 | 7 | |
| Santos (2018) | 110/16/0 | 111/17/2 | 236/16 | 239/21 | 0.174 | 8 | |
|
| |||||||
| Cases (GG/GT/TT) | Controls (GG/GT/TT) | Cases (G/T-allele) | Controls (G/T-allele) | ||||
| 172G/T | Lu (2007) | 261/351/104 | 240/335/144 | 873/559 | 815/623 | 0.169 | 7 |
| Gresner (2012) | 36/43/2 | 43/54/13 | 115/47 | 140/80 | 0.524 | 8 | |
| Kayani (2014) | 83/90/27 | 99/49/2 | 256/144 | 247/53 | 0.132 | 7 | |
| Santos (2018) | 51/52/23 | 51/56/23 | 154/98 | 158/102 | 0.271 | 8 | |
Results of overall and subgroup analyses for rs1801320.
| No | C versus G | CC versus GG | CG versus GG | CC+CG versus GG | CC versus CG+GG | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR | 95% CI | P(Z) | OR | (95% CI) | P(z) | OR | (95% CI) | P(z) | OR | (95% CI) | P(z) | OR | (95% CI) | P(z) | ||
| Overall | 10 | 1.32 | 1.03-1.71 | 0.032 | 1.34 | 0.69-2.61 | 0.388 | 1.50 | 1.03-2.19 | 0.033 | 1.44 | 1.05-1.99 | 0.026 | 1.15 | 0.57-2.34 | 0.696 |
| PCR-RFLP | 7 | 1.52 | 1.15-2.02 | 0.004 | 1.50 | 0.71-3.16 | 0.287 | 1.84 | 1.19-2.86 | 0.007 | 1.74 | 1.20-2.51 | 0.003 | 1.26 | 0.56-2.83 | 0.572 |
| PCR | 2 | 0.81 | 0.50-1.31 | 0.383 | 0.99 | 0.14-6.84 | 0.991 | 0.77 | 0.45-1.30 | 0.326 | 0.78 | 0.47-1.31 | 0.344 | 1.01 | 0.15-6.97 | 0.993 |
| Caucasian | 5 | 1.13 | 0.89-1.43 | 0.316 | 0.80 | 0.21-3.02 | 0.740 | 1.26 | 0.70-2.29 | 0.445 | 1.20 | 0.77-1.87 | 0.417 | 0.72 | 0.16-3.31 | 0.675 |
| Asian | 4 | 1.89 | 1.16-3.08 | 0.011 | 2.20 | 1.30-3.74 | 0.003 | 2.06 | 1.13-3.76 | 0.018 | 2.06 | 1.17-3.64 | 0.012 | 1.89 | 1.12-3.19 | 0.018 |
| Large sample | 5 | 1.41 | 1.02-1.96 | 0.040 | 1.18 | 0.45-3.06 | 0.741 | 1.75 | 1.01-3.01 | 0.045 | 1.61 | 1.04-2.51 | 0.033 | 0.98 | 0.35-2.80 | 0.976 |
| Small sample | 5 | 1.20 | 0.74-1.94 | 0.460 | 1.82 | 0.72-4.60 | 0.205 | 1.24 | 0.74-2.07 | 0.414 | 1.24 | 0.73-2.10 | 0.420 | 1.64 | 0.65-4.14 | 0.292 |
| HNC | 7 | 1.15 | 0.93-1.43 | 0.188 | 0.92 | 0.32-2.67 | 0.883 | 1.26 | 0.81-1.96 | 0.301 | 1.22 | 0.87-1.71 | 0.255 | 0.81 | 0.25-2.62 | 0.729 |
| EC | 3 | 2.07 | 1.01-4.25 | 0.048 | 2.08 | 1.17-3.71 | 0.013 | 2.38 | 0.96-5.89 | 0.060 | 2.31 | 1.00-5.35 | 0.050 | 1.78 | 1.00-3.15 | 0.049 |
Results of overall and subgroup analyses for rs1801321.
| No | T versus G | TT versus GG | TG versus GG | TT+TG versus GG | TT versus TG+GG | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR | 95% CI | P(Z) | OR | (95% CI) | P(z) | OR | (95% CI) | P(z) | OR | (95% CI) | P(z) | OR | (95% CI) | P(z) | ||
| Overall | 4 | 1.11 | 0.66-1.87 | 0.686 | 1.12 | 0.37-3.40 | 0.846 | 1.17 | 0.78-1.76 | 0.451 | 1.16 | 0.67-2.03 | 0.592 | 1.05 | 0.40-2.76 | 0.926 |
| PCR-RFLP | 2 | 1.46 | 0.48-4.48 | 0.504 | 3.02 | 0.12-76.6 | 0.502 | 1.42 | 0.64-3.17 | 0.394 | 1.52 | 0.50-4.65 | 0.463 | 2.56 | 0.15-44.5 | 0.518 |
| Caucasian | 2 | 0.82 | 0.72-0.95 | 0.007 | 0.44 | 0.14-1.43 | 0.173 | 0.96 | 0.78-1.19 | 0.723 | 0.86 | 0.71-1.06 | 0.161 | 0.45 | 0.14-1.46 | 0.182 |
| Small sample | 3 | 1.24 | 0.57-2.66 | 0.590 | 1.43 | 0.17-12.2 | 0.743 | 1.27 | 0.71-2.30 | 0.424 | 1.30 | 0.59-2.86 | 0.520 | 1.31 | 0.19-8.87 | 0.782 |
Figure 2Forest plot for the association of rs1801320 polymorphism and two associated cancer risks under the allelic genetic model.
Figure 3Sensitivity analysis of the pooled OR coefficients on the association for the rs1801320 polymorphism with two associated cancer risks under the allele model.
Figure 4Funnel plot of publication bias for rs1801320 SNP with two associated cancers under the allele model.
False-positive report probability values for the rs1801320 and rs1801321 gene polymorphisms.
| Variables | OR (95% CI) |
| Powerb | Prior probability | ||||
|---|---|---|---|---|---|---|---|---|
| 0.25 | 0.1 | 0.01 | 0.001 | 0.0001 | ||||
| rs1801320 | ||||||||
| C versus G | ||||||||
| Overall | 1.32 (1.03-1.71) | 0.036 | 0.833 | 0.113 | 0.277 | 0.808 | 0.977 | 0.998 |
| PCR-RFLP | 1.52 (1.15-2.02) | 0.004 | 0.464 | 0.025 | 0.070 | 0.455 | 0.894 | 0.988 |
| Asian | 1.89 (1.16-3.08) | 0.011 | 0.177 | 0.153 | 0.351 | 0.856 | 0.984 | 0.998 |
| Large sample | 1.41 (1.02-1.96) | 0.041 | 0.644 | 0.160 | 0.364 | 0.863 | 0.984 | 0.998 |
| EC | 2.07 (1.01-4.25) | 0.047 | 0.190 | 0.428 | 0.692 | 0.961 | 0.996 | 1.000 |
| CC versus GG | ||||||||
| Asian | 2.20 (1.30-3.74) | 0.004 | 0.079 | 0.120 | 0.291 | 0.819 | 0.979 | 0.998 |
| EC | 2.08 (1.17-3.71) | 0.013 | 0.134 | 0.227 | 0.468 | 0.906 | 0.990 | 0.999 |
| CG versus GG | ||||||||
| Overall | 1.50 (1.03-2.19) | 0.036 | 0.500 | 0.177 | 0.391 | 0.876 | 0.986 | 0.999 |
| PCR-RFLP | 1.84 (1.19-2.86) | 0.007 | 0.182 | 0.100 | 0.250 | 0.786 | 0.974 | 0.997 |
| Asian | 2.20 (1.30-3.74) | 0.004 | 0.079 | 0.120 | 0.291 | 0.819 | 0.979 | 0.998 |
| Large sample | 1.75 (1.01-3.01) | 0.043 | 0.289 | 0.309 | 0.579 | 0.937 | 0.993 | 0.999 |
| CC+CG versus GG | ||||||||
| Overall | 1.44 (1.05-1.99) | 0.027 | 0.598 | 0.120 | 0.290 | 0.818 | 0.978 | 0.998 |
| PCR-RFLP | 1.74 (1.20-2.51) | 0.003 | 0.214 | 0.041 | 0.114 | 0.585 | 0.934 | 0.993 |
| Asian | 2.06 (1.17-3.64) | 0.013 | 0.137 | 0.219 | 0.457 | 0.902 | 0.989 | 0.999 |
| Large sample | 1.61 (1.04-2.51) | 0.036 | 0.377 | 0.220 | 0.459 | 0.903 | 0.989 | 0.999 |
| CC versus CG+GG | ||||||||
| Asian | 1.89 (1.12-3.19) | 0.017 | 0.193 | 0.210 | 0.444 | 0.898 | 0.989 | 0.999 |
| EC | 1.78 (1.00-3.15) | 0.048 | 0.278 | 0.340 | 0.607 | 0.944 | 0.994 | 0.999 |
| rs1801321 | ||||||||
| T versus G | ||||||||
| Caucasian | 0.82 (0.72-0.95) | 0.008 | 0.997 | 0.024 | 0.069 | 0.449 | 0.892 | 0.988 |
aChi-square test was adopted to calculate the genotype frequency distributions. bStatistical power was calculated using the number of observations in the subgroup and the OR and P values in this table.