| Literature DB >> 31882888 |
Wenjing Zhang1,2, Michiyo Kataoka3, Hai Yen Doan2, Yasushi Ami4, Yuriko Suzaki4, Naokazu Takeda5, Masamichi Muramatsu2, Tian-Cheng Li6.
Abstract
We isolated a novel simian sapelovirus (SSV), Cam13, from fecal specimen of a cynomolgus monkey by using PLC/PRF/5 cells. The SSV infection of the cells induced an extensive cytopathic effect. Two types of virus particles with identical diameter (~32 nm) but different densities (1.348 g/cm3 and 1.295 g/cm3) were observed in the cell culture supernatants. The RNA genome of Cam13 possesses 8,155 nucleotides and a poly(A) tail, and it has a typical sapelovirus genome organization consisting of a 5' terminal untranslated region, a large open reading frame (ORF), and a 3' terminal untranslated region. The ORF encodes a single polyprotein that is subsequently processed into a leader protein (L), four structural proteins (VP1, VP2, VP3, and VP4) and seven functional proteins (2A, 2B, 2C, 3A, 3B, 3C, and 3D). We confirmed that 293 T, HepG2/C3A, Hep2C, Huh7 and primary cynomolgus monkey kidney cells were susceptible to SSV infection. In contrast, PK-15, Vero, Vero E6, RD-A, A549, and primary green monkey kidney cells were not susceptible to SSV infection. We established an ELISA for the detection of IgG antibodies against SSV by using the virus particles as the antigen. A total of 327 serum samples from cynomolgus monkeys and 61 serum samples from Japanese monkeys were examined, and the positive rates were 88.4% and 18%, respectively. These results demonstrated that SSV infection occurred frequently in the monkeys. Since Cam13 shared 76.54%-79.52% nucleotide sequence identities with other known SSVs, and constellated in a separate lineage in the phylogeny based on the entire genome sequence, we propose that Cam13 is a new genotype of the simian sapelovirus species.Entities:
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Year: 2019 PMID: 31882888 PMCID: PMC6934677 DOI: 10.1038/s41598-019-56725-z
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Purification of CPE agent (s). The supernatant of the infected PLC/PRF/5 cells was concentrated by ultracentrifugation, and further purified by CsCl gradient centrifugation. Aliquots from each fraction were analyzed by 5%–20% SDS-PAGE. Proteins were visualized by Coomassie blue staining (A) and western blotting with SSV-positive serum from Monkey C13 (B). The density of each fraction is shown (C). Virus particles in fraction 6 (D) and 13 (E) were observed by EM. Bar, 200 nm.
Figure 2Genome organization of the SSV Cam13 strain. The genome organization and aa sequences of the putative cleavage sites of the polyprotein of Cam13 are indicated.
Comparison of proteins and cleavage sites of sapeloviruses and avian anativirus TW90A.
| Proteins | Predicated protein size, aa | Cleavage sites | ||||||
|---|---|---|---|---|---|---|---|---|
| aCam13 | bSV2 | cHEV8 | dTW90A | Cam13 | SV2 | PSV | TW90A | |
| Polyprotein | 2428 | 2429 | 2180 | 2521 | — | — | — | — |
| L | 88 | 88 | 84 | 451 | — | — | — | — |
| VP4 | 67 | 67 | 53 | 69 | C/G | C/G | Q/G | Q/G |
| VP2 | 238 | 238 | 238 | 253 | K/S | K/K | K/A | Q/N |
| VP3 | 237 | 241 | 234 | 232 | Q/G | Q/G | Q/G | Q/G |
| VP1 | 297 | 284 | 285 | 290 | Q/G | Q/G | Q/G | Q/G |
| 2 A | 291 | 302 | 226 | 12 | L/G | T/G | L/G | T/V |
| 2B | 112 | 112 | 105 | 108 | Q/G | Q/G | Q/G | Q/G |
| 2 C | 333 | 333 | 332 | 333 | Q/G | Q/G | Q/G | Q/G |
| 3 A | 94 | 94 | 100 | 103 | Q/G | Q/G | Q/G | Q/G |
| 3B | 22 | 22 | 22 | 22 | Q/G | Q/G | Q/G | Q/G |
| 3 C | 183 | 182 | 182 | 185 | Q/G | Q/G | Q/G | Q/G |
| 3D | 466 | 466 | 461 | 163 | Q/G | Q/G | Q/G | Q/G |
aLC503602, SSVb. AY064708, SSVc. AF406813, PSVd. AY563023.
Figure 3Phylogenetic relationships among SSV strains. The amino acid and nucleotide sequence alignment was performed using ClustalW software, with an Avian anativirus TW90A as the out-group. The genetic distance was calculated by Kimura’s two-parameter method. Phylogenetic trees with 1,000 bootstrap replicates were generated by the Neighbor-Joining method using MEGA (ver. 6) based on the aa sequence of VP1 (A) and the entire genome (B) of SSV, PSV, and TW90A. Scale bar indicates amino acid or nucleotide substitutions per site. Strain Cam13 strain is shown in bold italic letters. The genotype is tentatively named based on the findings of our present study.
Nucleotide sequence identities (%) among VP1 of SSV strains.
| SSV strains | LC503602 (Cam13) | JX627573 | JX627574 | AY064708 (SV2) |
|---|---|---|---|---|
| JX627573 | 76.11 | |||
| JX627574 | 76.83 | 83.83 | ||
| AY064708 (SV2) | 70.25 | 70.38 | 69.42 | |
| EU789367 (VRDL1) | 60.00 | 61.00 | 58.48 | 59.54 |
Susceptibility of the cell lines to SSV and PSV.
| Cell line | SSV (Cam13) | PSV (Jpsv1315) |
|---|---|---|
| PLC/PRF/5 | + | + |
| 293 T | + | + |
| HepG2/C3/A | + | + |
| PCMKC | + | − |
| Hep2C | + | − |
| Huh7.5.1 | + | − |
| PK-15 | − | + |
| PGMKC | − | + |
| VeroE6 | − | + |
| RD-A | − | + |
| Vero | − | − |
| A549 | − | − |
+CPE was observed. −No CPE was observed.
Figure 4Detection of anti-SSV antibodies in monkeys. Anti-SSV IgG antibodies in 6 groups of monkeys were examined by ELISA using the purified Cam13 virus particles as the antigen. The number of samples for each OD value are plotted. The cutoff value is indicated by an arrow.
Figure 5Antigenic cross-reactivity between SSV and PSV. Anti-SSV IgG (white bars) and anti-RSV (black bars) antibody titers in the serum samples from cynomolgus monkeys (A) and in the serum sample from swine (B) were detected by antibody ELISA.