Literature DB >> 31881504

Pressure-dependent electronic structure calculations using integral equation-based solvation models.

Tim Pongratz1, Patrick Kibies1, Lukas Eberlein1, Nicolas Tielker1, Christoph Hölzl2, Sho Imoto3, Markus Beck Erlach4, Simon Kurrmann4, Paul Hendrik Schummel1, Martin Hofmann5, Oliver Reiser5, Roland Winter1, Werner Kremer4, Hans Robert Kalbitzer4, Dominik Marx3, Dominik Horinek2, Stefan M Kast6.   

Abstract

Recent methodological progress in quantum-chemical calculations using the "embedded cluster reference interaction site model" (EC-RISM) integral equation theory is reviewed in the context of applying it as a solvation model for calculating pressure-dependent thermodynamic and spectroscopic properties of molecules immersed in water. The methodology is based on self-consistent calculations of electronic and solvation structure around dissolved molecules where pressure enters the equations via an appropriately chosen solvent response function and the pure solvent density. Besides specification of a dispersion-repulsion force field for solute-solvent interactions, the EC-RISM approach derives the electrostatic interaction contributions directly from the wave function. We further develop and apply the method to a variety of benchmark cases for which computational or experimental reference data are either available in the literature or are generated specifically for this purpose in this work. Starting with an enhancement to predict hydration free energies at non-ambient pressures, which is the basis for pressure-dependent molecular population estimation, we demonstrate the performance on the calculation of the autoionization constant of water. Spectroscopic problems are addressed by studying the biologically relevant small osmolyte TMAO (trimethylamine N-oxide). Pressure-dependent NMR shifts are predicted and compared to experiments taking into account proper computational referencing methods that extend earlier work. The experimentally observed IR blue-shifts of certain vibrational bands of TMAO as well as of the cyanide anion are reproduced by novel methodology that allows for weighing equilibrium and non-equilibrium solvent relaxation effects. Taken together, the model systems investigated allow for an assessment of the reliability of the EC-RISM approach for studying pressure-dependent biophysical processes.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  EC-RISM theory; High pressure; IR and NMR spectroscopy; Molecular dynamics simulations; Organic synthesis; Quantum chemistry

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Year:  2019        PMID: 31881504     DOI: 10.1016/j.bpc.2019.106258

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  4 in total

1.  The SAMPL6 challenge on predicting octanol-water partition coefficients from EC-RISM theory.

Authors:  Nicolas Tielker; Daniel Tomazic; Lukas Eberlein; Stefan Güssregen; Stefan M Kast
Journal:  J Comput Aided Mol Des       Date:  2020-01-24       Impact factor: 3.686

2.  The Ionic Product of Water in the Eye of the Quantum Cluster Equilibrium.

Authors:  Barbara Kirchner; Johannes Ingenmey; Michael von Domaros; Eva Perlt
Journal:  Molecules       Date:  2022-02-14       Impact factor: 4.411

3.  Implementation and Optimization of the Embedded Cluster Reference Interaction Site Model with Atomic Charges.

Authors:  Ádám Ganyecz; Mihály Kállay
Journal:  J Phys Chem A       Date:  2022-04-08       Impact factor: 2.944

4.  Dynamical Model for the Counteracting Effects of Trimethylamine N-Oxide on Urea in Aqueous Solutions under Pressure.

Authors:  Xiaojing Teng; Toshiko Ichiye
Journal:  J Phys Chem B       Date:  2020-02-27       Impact factor: 2.991

  4 in total

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