| Literature DB >> 31877139 |
Qiyu Luo1, Jiping Wei1, Zhaoxia Dong1, Xuefeng Shen1, Yong Chen1.
Abstract
BACKGROUND: Paraquat is one of the most effective herbicides used to control weeds in agricultural management, while the pernicious weed goosegrass (Eleusine indica) has evolved resistance to herbicides, including paraquat. Polyamines provide high-level paraquat resistance in many plants. In the present study, we selected three polyamines, namely, putrescine, spermidine, and spermine, as putative genes to investigate their correlation with paraquat resistance by using paraquat-resistant (R) and paraquat-susceptible (S) goosegrass populations.Entities:
Mesh:
Substances:
Year: 2019 PMID: 31877139 PMCID: PMC6932794 DOI: 10.1371/journal.pone.0216513
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Primers used to amplify four putative genes by real-time PCR.
| Gene | Primer | Amplicon length |
|---|---|---|
| 85 bp | ||
| 81 bp | ||
| 107 bp | ||
| 100 bp | ||
| 101 bp |
Actin: Gene used for internal control.
Biological analysis of four putative genes*.
| Gene | Homologous gene | Accession | Description | Query cover | E value | Identity |
|---|---|---|---|---|---|---|
| XM_012848229.1 | 3-ketoacyl-CoA synthase 11-like | 99% | 0.0 | 88% | ||
| XM_004981451.4 | syntaxin-121 | 87% | 0.0 | 88% | ||
| XM_004969589.2 | ABC transporter B family member 4-like | 90% | 0.0 | 86% | ||
| XM_004985233.3 | calcium-transporting ATPase 1 or plasma membrane-type | 81% | 0.0 | 87% |
*More information on the KCS, SYP121, ABCB, and Ca2+-ATP genes can be found on the NCBI website (http://blast.ncbi.nlm.nih.gov); it should be noted that their sequences were used as query sequences for BLASTN searches.
Fig 1Relative transcript levels of putative genes after paraquat treatment.
A. Gene transcript levels in susceptible (S) and resistant (R) goosegrass at the indicated times after paraquat treatment. Transcripts were detected by real-time PCR using total RNA extracted from 10-d-old seedlings sprayed with 10/HM paraquat. Error bars represent the SD (n = 3). B. Amplification products of 4 putative genes from goosegrass by RT-PCR. For the M:DL 2000 marker, “-” indicates the negative control. R0, R30, R60, R90, R120, and R180 indicate samples of R goosegrass seedlings taken 0, 30, 60, 90, 120 and 180 min after paraquat treatment, while S0, S30, S60, S90, S120 and S180 indicate samples of S goosegrass seedlings taken 0, 30, 60, 90, 120 and 180 min after paraquat treatment, respectively.
Fig 2Polyamine levels in susceptible (S) and resistant (R) goosegrass after a paraquat treatment.
Putrescine (A), spermidine (B), and spermine (C) were extracted from shoots of R goosegrass (black bar) and S goosegrass (white bar) seedlings 0, 30, 60, 90, 120, and 180 min after spraying with paraquat and then quantified by HPLC. Different lowercase letters indicate significant differences at P<0.05 (t-test).