Literature DB >> 31875881

A local group differences test for subject-level multivariate density neuroimaging outcomes.

Jordan D Dworkin1, Kristin A Linn1, Andrew J Solomon2, Theodore D Satterthwaite3, Armin Raznahan4, Rohit Bakshi5, Russell T Shinohara1.   

Abstract

A great deal of neuroimaging research focuses on voxel-wise analysis or segmentation of damaged tissue, yet many diseases are characterized by diffuse or non-regional neuropathology. In simple cases, these processes can be quantified using summary statistics of voxel intensities. However, the manifestation of a disease process in imaging data is often unknown, or appears as a complex and nonlinear relationship between the voxel intensities on various modalities. When the relevant pattern is unknown, summary statistics are often unable to capture differences between disease groups, and their use may encourage post hoc searches for the optimal summary measure. In this study, we introduce the multi-modal density testing (MMDT) framework for the naive discovery of group differences in voxel intensity profiles. MMDT operationalizes multi-modal magnetic resonance imaging (MRI) data as multivariate subject-level densities of voxel intensities and utilizes kernel density estimation to develop a local two-sample test for individual points within the density space. Through simulations, we show that this method controls type I error and recovers relevant differences when applied to a specified point. Additionally, we demonstrate the ability to maintain power while controlling the family-wise error rate and false discovery rate when applying the test over a grid of points within the density space. Finally, we apply this method to a study of subjects with either multiple sclerosis (MS) or conditions that tend to mimic MS on MRI, and find significant differences between the two groups in their voxel intensity profiles within the thalamus.
© The Author 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  High-dimensional data; Multivariate densities; Neuroimaging

Mesh:

Year:  2021        PMID: 31875881      PMCID: PMC8286551          DOI: 10.1093/biostatistics/kxz058

Source DB:  PubMed          Journal:  Biostatistics        ISSN: 1465-4644            Impact factor:   5.899


  28 in total

1.  Emergence of system roles in normative neurodevelopment.

Authors:  Shi Gu; Theodore D Satterthwaite; John D Medaglia; Muzhi Yang; Raquel E Gur; Ruben C Gur; Danielle S Bassett
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-19       Impact factor: 11.205

2.  Normal-appearing white matter in multiple sclerosis has heterogeneous, diffusely prolonged T(2).

Authors:  Kenneth P Whittall; Alex L MacKay; David K B Li; Irene M Vavasour; Craig K Jones; Donald W Paty
Journal:  Magn Reson Med       Date:  2002-02       Impact factor: 4.668

3.  Multi-atlas skull-stripping.

Authors:  Jimit Doshi; Guray Erus; Yangming Ou; Bilwaj Gaonkar; Christos Davatzikos
Journal:  Acad Radiol       Date:  2013-12       Impact factor: 3.173

4.  Threshold-free cluster enhancement: addressing problems of smoothing, threshold dependence and localisation in cluster inference.

Authors:  Stephen M Smith; Thomas E Nichols
Journal:  Neuroimage       Date:  2008-04-11       Impact factor: 6.556

5.  On distance-based permutation tests for between-group comparisons.

Authors:  Philip T Reiss; M Henry H Stevens; Zarrar Shehzad; Eva Petkova; Michael P Milham
Journal:  Biometrics       Date:  2009-08-10       Impact factor: 2.571

6.  Faster family-wise error control for neuroimaging with a parametric bootstrap.

Authors:  Simon N Vandekar; Theodore D Satterthwaite; Adon Rosen; Rastko Ciric; David R Roalf; Kosha Ruparel; Ruben C Gur; Raquel E Gur; Russell T Shinohara
Journal:  Biostatistics       Date:  2018-10-01       Impact factor: 5.899

7.  A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features.

Authors:  Hui Zhang; Suyash P Awate; Sandhitsu R Das; John H Woo; Elias R Melhem; James C Gee; Paul A Yushkevich
Journal:  Med Image Anal       Date:  2010-05-26       Impact factor: 8.545

Review 8.  The thalamus and multiple sclerosis: modern views on pathologic, imaging, and clinical aspects.

Authors:  Alireza Minagar; Michael H Barnett; Ralph H B Benedict; Daniel Pelletier; Istvan Pirko; Mohamad Ali Sahraian; Elliott Frohman; Robert Zivadinov
Journal:  Neurology       Date:  2013-01-08       Impact factor: 9.910

9.  Rating neurologic impairment in multiple sclerosis: an expanded disability status scale (EDSS).

Authors:  J F Kurtzke
Journal:  Neurology       Date:  1983-11       Impact factor: 9.910

10.  Linked dimensions of psychopathology and connectivity in functional brain networks.

Authors:  Cedric Huchuan Xia; Zongming Ma; Rastko Ciric; Shi Gu; Richard F Betzel; Antonia N Kaczkurkin; Monica E Calkins; Philip A Cook; Angel García de la Garza; Simon N Vandekar; Zaixu Cui; Tyler M Moore; David R Roalf; Kosha Ruparel; Daniel H Wolf; Christos Davatzikos; Ruben C Gur; Raquel E Gur; Russell T Shinohara; Danielle S Bassett; Theodore D Satterthwaite
Journal:  Nat Commun       Date:  2018-08-01       Impact factor: 14.919

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