| Literature DB >> 31871749 |
Tristan Neumann1, Inke Jess1, Christian Näther1.
Abstract
In the crystal structure of the title compound, (C5H6N)[Cr(NCS)4(C5H5N)2]·C5H5N, the CrIII ions are octa-hedrally coordinated by four N-bonding thio-cyanate anions and two pyridine ligands into discrete negatively charged complexes, with the CrIII ion, as well as the two pyridine ligands, located on crystallographic mirror planes. The mean planes of the two pyridine ligands are rotated with respect to each other by 90°. Charge balance is achieved by one protonated pyridine mol-ecule that is hydrogen bonded to one additional pyridine solvent mol-ecule, with both located on crystallographic mirror planes and again rotated by exactly 90°. The pyridinium H atom was refined as disordered between both pyridine N atoms in a 70:30 ratio, leading to a linear N-H⋯N hydrogen bond. In the crystal, discrete complexes are linked by weak C-H⋯S hydrogen bonds into chains that are connected by additional C-H⋯S hydrogen bonding via the pyridinium cations and solvent mol-ecules into layers and finally into a three-dimensional network. © Neumann et al. 2019.Entities:
Keywords: chromium(III); crystal structure,discrete complex; hydrogen bonding; pyridinium
Year: 2019 PMID: 31871749 PMCID: PMC6895946 DOI: 10.1107/S2056989019014488
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound with the atom labelling and displacement ellipsoids drawn at the 50% probability level. The pyridinium N-bound H atom is disordered over two sets of sites.
Figure 2View of the coordination sphere of the CrIII ion.
Selected geometric parameters (Å, °)
| Cr1—N2i | 1.980 (5) | Cr1—N1i | 1.991 (5) |
| Cr1—N2 | 1.980 (5) | Cr1—N21 | 2.080 (6) |
| Cr1—N1 | 1.991 (5) | Cr1—N11 | 2.102 (6) |
| N2i—Cr1—N2 | 88.4 (3) | N1—Cr1—N21 | 90.39 (18) |
| N2i—Cr1—N1 | 91.33 (18) | N1i—Cr1—N21 | 90.40 (18) |
| N2—Cr1—N1 | 178.9 (2) | N2i—Cr1—N11 | 88.98 (18) |
| N2i—Cr1—N1i | 178.9 (2) | N2—Cr1—N11 | 88.98 (18) |
| N2—Cr1—N1i | 91.33 (18) | N1—Cr1—N11 | 90.00 (18) |
| N1—Cr1—N1i | 88.9 (3) | N1i—Cr1—N11 | 90.00 (18) |
| N2i—Cr1—N21 | 90.62 (18) | N21—Cr1—N11 | 179.4 (3) |
| N2—Cr1—N21 | 90.62 (18) |
Symmetry code: (i) .
Figure 3View of the pyridinium–pyridine dimer, with N–H⋯N hydrogen bonding shown as dashed lines. The pyridinium N-bound H atom is disordered over two sets of sites.
Figure 4View of a chain (top) and the crystal structure of the title compound viewed along the crystallographic b-axis and with the intermolecular hydrogen bonding shown as dashed lines.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C12—H12⋯S1ii | 0.93 | 2.93 | 3.647 (6) | 135 |
| C32—H32⋯S2iii | 0.93 | 3.01 | 3.719 (8) | 134 |
| C32—H32⋯S2iv | 0.93 | 3.01 | 3.719 (8) | 134 |
| C35—H35⋯S2v | 0.93 | 2.90 | 3.494 (7) | 123 |
| C35—H35⋯S2vi | 0.93 | 2.90 | 3.494 (7) | 123 |
| N31—H31 | 0.86 | 1.82 | 2.684 (11) | 179 |
| N41—H41 | 0.86 | 1.82 | 2.684 (11) | 180 |
Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) .
Experimental details
| Crystal data | |
| Chemical formula | (C5H6N)[Cr(NCS)4(C5H5N)2]·C5H5N |
|
| 601.73 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 293 |
|
| 10.1068 (5), 8.8168 (6), 16.2628 (9) |
|
| 1449.17 (15) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.71 |
| Crystal size (mm) | 0.12 × 0.07 × 0.02 |
| Data collection | |
| Diffractometer | Stoe IPDS1 |
| Absorption correction | Numerical ( |
|
| 0.786, 0.966 |
| No. of measured, independent and observed [ | 12253, 3153, 2452 |
|
| 0.062 |
| (sin θ/λ)max (Å−1) | 0.639 |
| Refinement | |
|
| 0.043, 0.106, 1.02 |
| No. of reflections | 3153 |
| No. of parameters | 193 |
| No. of restraints | 1 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.30, −0.42 |
| Absolute structure | Flack |
| Absolute structure parameter | −0.027 (19) |
Computer programs: X-AREA (Stoe & Cie, 2008 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), XP in SHELXTL (Sheldrick, 2008 ▸), DIAMOND (Brandenburg, 1999 ▸) and publCIF (Westrip, 2010 ▸).
| (C5H6N)[Cr(NCS)4(C5H5N)2]·C5H5N | |
| Mo | |
| Orthorhombic, | Cell parameters from 12253 reflections |
| θ = 2.6–28.1° | |
| µ = 0.71 mm−1 | |
| Plate, green | |
| 0.12 × 0.07 × 0.02 mm | |
| Stoe IPDS1 diffractometer | 2452 reflections with |
| Phi scans | |
| Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2008) | θmax = 27.0°, θmin = 2.6° |
| 12253 measured reflections | |
| 3153 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.30 e Å−3 | |
| 3153 reflections | Δρmin = −0.42 e Å−3 |
| 193 parameters | Absolute structure: Flack |
| 1 restraint | Absolute structure parameter: −0.027 (19) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| Cr1 | 0.500000 | 0.64497 (13) | 0.99944 (7) | 0.0350 (3) | |
| N1 | 0.6380 (5) | 0.5526 (5) | 0.9278 (3) | 0.0456 (11) | |
| C1 | 0.7030 (6) | 0.4870 (6) | 0.8803 (3) | 0.0409 (12) | |
| S1 | 0.7901 (2) | 0.39515 (18) | 0.81396 (11) | 0.0671 (5) | |
| N2 | 0.3635 (5) | 0.7405 (5) | 1.0697 (3) | 0.0453 (11) | |
| C2 | 0.2924 (6) | 0.8219 (6) | 1.1063 (3) | 0.0410 (12) | |
| S2 | 0.1955 (2) | 0.9312 (2) | 1.15735 (11) | 0.0689 (5) | |
| N11 | 0.500000 | 0.8403 (7) | 0.9254 (4) | 0.0378 (13) | |
| C11 | 0.6137 (6) | 0.9059 (6) | 0.9028 (3) | 0.0446 (13) | |
| H11 | 0.693081 | 0.859637 | 0.917262 | 0.053* | |
| C12 | 0.6175 (7) | 1.0412 (6) | 0.8584 (4) | 0.0522 (14) | |
| H12 | 0.697858 | 1.084674 | 0.843515 | 0.063* | |
| C13 | 0.500000 | 1.1087 (10) | 0.8372 (5) | 0.054 (2) | |
| H13 | 0.499999 | 1.200033 | 0.808600 | 0.065* | |
| N21 | 0.500000 | 0.4529 (7) | 1.0738 (4) | 0.0380 (14) | |
| C21 | 0.500000 | 0.4633 (10) | 1.1565 (5) | 0.051 (2) | |
| H21 | 0.500000 | 0.558953 | 1.180637 | 0.061* | |
| C22 | 0.500000 | 0.3371 (11) | 1.2067 (6) | 0.065 (3) | |
| H22 | 0.500000 | 0.348073 | 1.263584 | 0.078* | |
| C23 | 0.500000 | 0.1953 (12) | 1.1719 (6) | 0.068 (3) | |
| H23 | 0.500000 | 0.109435 | 1.205088 | 0.082* | |
| C24 | 0.500000 | 0.1805 (10) | 1.0868 (6) | 0.059 (2) | |
| H24 | 0.500000 | 0.085445 | 1.061946 | 0.070* | |
| C25 | 0.500000 | 0.3110 (9) | 1.0405 (5) | 0.0441 (18) | |
| H25 | 0.500000 | 0.301981 | 0.983543 | 0.053* | |
| N31 | 0.000000 | 1.0017 (9) | 0.4322 (5) | 0.061 (2) | |
| H31A | 0.000000 | 0.920955 | 0.461881 | 0.073* | 0.3 |
| C31 | 0.000000 | 0.9933 (10) | 0.3502 (6) | 0.057 (2) | |
| H31 | 0.000000 | 0.898380 | 0.325264 | 0.068* | |
| C32 | 0.000000 | 1.1428 (12) | 0.4678 (6) | 0.062 (2) | |
| H32 | 0.000000 | 1.150849 | 0.524812 | 0.075* | |
| C33 | 0.000000 | 1.2701 (11) | 0.4217 (6) | 0.060 (2) | |
| H33 | 0.000000 | 1.364655 | 0.447130 | 0.072* | |
| C34 | 0.000000 | 1.2604 (10) | 0.3374 (5) | 0.051 (2) | |
| H34 | 0.000000 | 1.347438 | 0.305068 | 0.061* | |
| C35 | 0.000000 | 1.1195 (10) | 0.3021 (5) | 0.051 (2) | |
| H35 | 0.000000 | 1.109984 | 0.245176 | 0.062* | |
| N41 | 0.000000 | 0.7526 (8) | 0.5271 (5) | 0.0557 (19) | |
| H41A | 0.000000 | 0.832178 | 0.496530 | 0.067* | 0.7 |
| C41 | 0.1138 (8) | 0.6919 (8) | 0.5505 (5) | 0.0686 (19) | |
| H41 | 0.192859 | 0.735531 | 0.533295 | 0.082* | |
| C42 | 0.1165 (8) | 0.5636 (8) | 0.6004 (5) | 0.071 (2) | |
| H42 | 0.196943 | 0.522486 | 0.617040 | 0.085* | |
| C43 | 0.000000 | 0.4985 (10) | 0.6248 (5) | 0.057 (2) | |
| H43 | 0.000001 | 0.411685 | 0.657268 | 0.069* |
| Cr1 | 0.0346 (6) | 0.0369 (5) | 0.0333 (5) | 0.000 | 0.000 | −0.0032 (5) |
| N1 | 0.048 (3) | 0.049 (3) | 0.039 (2) | 0.001 (2) | 0.000 (2) | 0.001 (2) |
| C1 | 0.040 (3) | 0.037 (3) | 0.045 (3) | −0.001 (2) | 0.006 (3) | −0.001 (2) |
| S1 | 0.0761 (13) | 0.0503 (8) | 0.0749 (11) | −0.0015 (8) | 0.0372 (9) | −0.0093 (8) |
| N2 | 0.045 (3) | 0.047 (3) | 0.044 (3) | 0.002 (2) | 0.006 (2) | −0.003 (2) |
| C2 | 0.040 (3) | 0.045 (3) | 0.038 (3) | 0.001 (2) | −0.003 (2) | 0.001 (2) |
| S2 | 0.0684 (12) | 0.0846 (12) | 0.0537 (9) | 0.0326 (9) | 0.0046 (9) | −0.0143 (8) |
| N11 | 0.036 (4) | 0.040 (3) | 0.037 (3) | 0.000 | 0.000 | −0.001 (3) |
| C11 | 0.041 (3) | 0.046 (3) | 0.047 (3) | −0.003 (2) | 0.001 (2) | 0.004 (2) |
| C12 | 0.059 (4) | 0.045 (3) | 0.052 (3) | −0.007 (3) | 0.010 (3) | 0.005 (3) |
| C13 | 0.071 (6) | 0.045 (4) | 0.046 (5) | 0.000 | 0.000 | 0.006 (4) |
| N21 | 0.040 (4) | 0.035 (3) | 0.039 (3) | 0.000 | 0.000 | −0.004 (2) |
| C21 | 0.064 (6) | 0.054 (5) | 0.035 (4) | 0.000 | 0.000 | −0.001 (3) |
| C22 | 0.090 (8) | 0.064 (6) | 0.042 (4) | 0.000 | 0.000 | 0.007 (4) |
| C23 | 0.096 (8) | 0.059 (6) | 0.050 (5) | 0.000 | 0.000 | 0.022 (5) |
| C24 | 0.074 (7) | 0.047 (5) | 0.055 (5) | 0.000 | 0.000 | 0.007 (4) |
| C25 | 0.051 (5) | 0.042 (4) | 0.039 (4) | 0.000 | 0.000 | 0.001 (3) |
| N31 | 0.051 (5) | 0.055 (4) | 0.075 (5) | 0.000 | 0.000 | 0.020 (4) |
| C31 | 0.059 (6) | 0.045 (4) | 0.066 (6) | 0.000 | 0.000 | −0.005 (4) |
| C32 | 0.066 (6) | 0.076 (6) | 0.045 (4) | 0.000 | 0.000 | 0.003 (5) |
| C33 | 0.073 (7) | 0.051 (5) | 0.055 (5) | 0.000 | 0.000 | −0.010 (4) |
| C34 | 0.054 (5) | 0.053 (5) | 0.045 (4) | 0.000 | 0.000 | −0.001 (4) |
| C35 | 0.052 (5) | 0.059 (5) | 0.043 (4) | 0.000 | 0.000 | −0.009 (4) |
| N41 | 0.054 (5) | 0.050 (4) | 0.063 (5) | 0.000 | 0.000 | 0.014 (3) |
| C41 | 0.051 (4) | 0.064 (4) | 0.091 (5) | 0.000 (3) | 0.004 (4) | 0.017 (4) |
| C42 | 0.056 (5) | 0.071 (4) | 0.086 (5) | 0.016 (3) | −0.002 (4) | 0.018 (4) |
| C43 | 0.079 (7) | 0.045 (4) | 0.047 (5) | 0.000 | 0.000 | 0.009 (4) |
| Cr1—N2i | 1.980 (5) | C23—H23 | 0.9300 |
| Cr1—N2 | 1.980 (5) | C24—C25 | 1.375 (11) |
| Cr1—N1 | 1.991 (5) | C24—H24 | 0.9300 |
| Cr1—N1i | 1.991 (5) | C25—H25 | 0.9300 |
| Cr1—N21 | 2.080 (6) | N31—C31 | 1.336 (13) |
| Cr1—N11 | 2.102 (6) | N31—C32 | 1.372 (13) |
| N1—C1 | 1.168 (7) | N31—H31A | 0.8600 |
| C1—S1 | 1.610 (6) | C31—C35 | 1.360 (13) |
| N2—C2 | 1.177 (7) | C31—H31 | 0.9300 |
| C2—S2 | 1.605 (6) | C32—C33 | 1.350 (13) |
| N11—C11 | 1.338 (7) | C32—H32 | 0.9300 |
| N11—C11i | 1.338 (7) | C33—C34 | 1.375 (12) |
| C11—C12 | 1.395 (7) | C33—H33 | 0.9300 |
| C11—H11 | 0.9300 | C34—C35 | 1.368 (11) |
| C12—C13 | 1.373 (8) | C34—H34 | 0.9300 |
| C12—H12 | 0.9300 | C35—H35 | 0.9300 |
| C13—H13 | 0.9300 | N41—C41 | 1.324 (8) |
| N21—C21 | 1.349 (10) | N41—C41ii | 1.324 (8) |
| N21—C25 | 1.363 (10) | N41—H41A | 0.8600 |
| C21—C22 | 1.379 (12) | C41—C42 | 1.393 (9) |
| C21—H21 | 0.9300 | C41—H41 | 0.9300 |
| C22—C23 | 1.373 (15) | C42—C43 | 1.369 (9) |
| C22—H22 | 0.9300 | C42—H42 | 0.9300 |
| C23—C24 | 1.390 (13) | C43—H43 | 0.9300 |
| N2i—Cr1—N2 | 88.4 (3) | C22—C23—C24 | 119.8 (9) |
| N2i—Cr1—N1 | 91.33 (18) | C22—C23—H23 | 120.1 |
| N2—Cr1—N1 | 178.9 (2) | C24—C23—H23 | 120.1 |
| N2i—Cr1—N1i | 178.9 (2) | C25—C24—C23 | 117.8 (9) |
| N2—Cr1—N1i | 91.33 (18) | C25—C24—H24 | 121.1 |
| N1—Cr1—N1i | 88.9 (3) | C23—C24—H24 | 121.1 |
| N2i—Cr1—N21 | 90.62 (18) | N21—C25—C24 | 123.5 (7) |
| N2—Cr1—N21 | 90.62 (18) | N21—C25—H25 | 118.3 |
| N1—Cr1—N21 | 90.39 (18) | C24—C25—H25 | 118.3 |
| N1i—Cr1—N21 | 90.40 (18) | C31—N31—C32 | 118.1 (8) |
| N2i—Cr1—N11 | 88.98 (18) | C31—N31—H31A | 120.9 |
| N2—Cr1—N11 | 88.98 (18) | C32—N31—H31A | 120.9 |
| N1—Cr1—N11 | 90.00 (18) | N31—C31—C35 | 121.9 (8) |
| N1i—Cr1—N11 | 90.00 (18) | N31—C31—H31 | 119.0 |
| N21—Cr1—N11 | 179.4 (3) | C35—C31—H31 | 119.0 |
| C1—N1—Cr1 | 169.7 (5) | C33—C32—N31 | 121.4 (9) |
| N1—C1—S1 | 178.9 (6) | C33—C32—H32 | 119.3 |
| C2—N2—Cr1 | 167.6 (5) | N31—C32—H32 | 119.3 |
| N2—C2—S2 | 179.1 (5) | C32—C33—C34 | 120.1 (9) |
| C11—N11—C11i | 118.4 (7) | C32—C33—H33 | 119.9 |
| C11—N11—Cr1 | 120.8 (3) | C34—C33—H33 | 119.9 |
| C11i—N11—Cr1 | 120.7 (3) | C35—C34—C33 | 118.3 (8) |
| N11—C11—C12 | 122.4 (6) | C35—C34—H34 | 120.8 |
| N11—C11—H11 | 118.8 | C33—C34—H34 | 120.8 |
| C12—C11—H11 | 118.8 | C31—C35—C34 | 120.1 (8) |
| C13—C12—C11 | 118.5 (6) | C31—C35—H35 | 119.9 |
| C13—C12—H12 | 120.8 | C34—C35—H35 | 119.9 |
| C11—C12—H12 | 120.8 | C41—N41—C41ii | 120.6 (8) |
| C12i—C13—C12 | 119.8 (8) | C41—N41—H41A | 119.7 |
| C12i—C13—H13 | 120.1 | C41ii—N41—H41A | 119.7 |
| C12—C13—H13 | 120.1 | N41—C41—C42 | 120.9 (7) |
| C21—N21—C25 | 117.3 (7) | N41—C41—H41 | 119.6 |
| C21—N21—Cr1 | 121.6 (5) | C42—C41—H41 | 119.6 |
| C25—N21—Cr1 | 121.1 (5) | C43—C42—C41 | 119.5 (7) |
| N21—C21—C22 | 122.4 (8) | C43—C42—H42 | 120.3 |
| N21—C21—H21 | 118.8 | C41—C42—H42 | 120.3 |
| C22—C21—H21 | 118.8 | C42—C43—C42ii | 118.7 (8) |
| C23—C22—C21 | 119.4 (8) | C42—C43—H43 | 120.6 |
| C23—C22—H22 | 120.3 | C42ii—C43—H43 | 120.6 |
| C21—C22—H22 | 120.3 |
| H··· | ||||
| C12—H12···S1iii | 0.93 | 2.93 | 3.647 (6) | 135 |
| C32—H32···S2iv | 0.93 | 3.01 | 3.719 (8) | 134 |
| C32—H32···S2v | 0.93 | 3.01 | 3.719 (8) | 134 |
| C35—H35···S2vi | 0.93 | 2.90 | 3.494 (7) | 123 |
| C35—H35···S2vii | 0.93 | 2.90 | 3.494 (7) | 123 |
| N31—H31 | 0.86 | 1.82 | 2.684 (11) | 179 |
| N41—H41 | 0.86 | 1.82 | 2.684 (11) | 180 |