| Literature DB >> 31871746 |
Trung Vu Quoc1, Duong Tran Thi Thuy1,2, Thanh Phung Ngoc1,3, Manh Vu Quoc4, Hien Nguyen1, Linh Duong Khanh1, Anh Tu Quang1, Luc Van Meervelt5.
Abstract
In the title compound, C17H21NO4S, the 1,4-di-hydro-pyridine ring has an envelope conformation with the Csp 3 atom at the flap. The thio-phene ring is nearly perpendicular to the best plane through the 1,4-di-hydro-pyridine ring, the dihedral angle being 82.19 (13)°. In the crystal, chains running along the b-axis direction are formed through N-H⋯O inter-actions between the 1,4-di-hydro-pyridine N atom and one of the O atoms of the ester groups. Neighbouring chains are linked by C-H⋯O and C-H⋯π inter-actions. A Hirshfeld surface analysis shows that the most prominent contributuion to the surface contacts are H⋯H contacts (55.1%). © Vu Quoc et al. 2019.Entities:
Keywords: 1,4-dihydropyridine; Hirshfeld analysis; crystal structure; hydrogen bonding
Year: 2019 PMID: 31871746 PMCID: PMC6895956 DOI: 10.1107/S2056989019015081
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of the molecular structure of the title compound, with atom labels and displacement ellipsoids drawn at the 50% probability level. H atoms are shown as small circles of arbitrary radii.
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the thiophene S1/C2–C5 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N6—H6⋯O14i | 0.82 (4) | 2.19 (4) | 3.010 (3) | 176 (3) |
| C5—H5⋯O19ii | 0.93 | 2.52 | 3.220 (4) | 133 |
| C9—H9⋯O20 | 0.98 | 2.36 | 2.739 (3) | 102 |
| C12—H12 | 0.96 | 2.33 | 2.768 (3) | 107 |
| C23—H23 | 0.96 | 2.42 | 2.826 (4) | 105 |
| C17—H17 | 0.96 | 2.79 | 3.720 (4) | 162 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2Partial crystal packing of the title compound, showing the chain formation along the b axis by N—H⋯O interactions (blue dashed lines). Parallel chains are linked by C—H⋯O interactions (red dashed lines; see Table 1 ▸ for symmetry codes).
Figure 3Partial crystal packing of the title compound, showing the inversion dimer formation through C—H⋯π interactions (grey dashed lines; Cg1 is the centroid of the S1/C2–C5 ring; see Table 1 ▸ for symmetry code).
Figure 4Two views of the Hirshfeld surface mapped over d norm for the title compound in the range −0.4662 to +1.2830 arbitrary units.
Figure 5Full two-dimensional fingerprint plots for the title compound, showing (a) all interactions, and delineated into (b) H⋯H, (c) O⋯H/H⋯O, (d) C⋯H/H⋯C, (e) S⋯H/H⋯S, (f) N⋯H/H⋯N interactions. The d i and d e values are the closest internal and external distances (in Å) from a given point on the Hirshfeld surface.
Enrichment ratios for the title compound
| Parameter | Ratio |
|---|---|
| H⋯H | 0.94 |
| C⋯H | 1.23 |
| O⋯H | 1.24 |
| N⋯H | 1.30 |
| S⋯H | 1.11 |
| S⋯C | 0.96 |
| S⋯O | 0.82 |
Figure 6Four possible orientations of the C=O groups for diethyl 2,6-dimethyl-1,4-dihydropyridine-3,5-dicarboxylate derivatives with a ring substituent (R) at C4.
Figure 7Reaction scheme for the synthesis of the title compound.
Experimental details
| Crystal data | |
| Chemical formula | C17H21NO4S |
|
| 335.41 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 15.6801 (8), 7.4311 (3), 15.5968 (8) |
| β (°) | 111.424 (6) |
|
| 1691.77 (16) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.21 |
| Crystal size (mm) | 0.5 × 0.2 × 0.05 |
| Data collection | |
| Diffractometer | Rigaku Oxford Diffraction SuperNova, single source at offset/far, Eos |
| Absorption correction | Multi-scan ( |
|
| 0.555, 1.000 |
| No. of measured, independent and observed [ | 19775, 3446, 2805 |
|
| 0.027 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
|
| 0.061, 0.187, 1.05 |
| No. of reflections | 3446 |
| No. of parameters | 216 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.53, −0.47 |
Computer programs: CrysAlis PRO (Rigaku OD, 2018 ▸), SHELXT2014 (Sheldrick, 2015a ▸), SHELXL2016 (Sheldrick, 2015b ▸) and OLEX2 (Dolomanov et al., 2009 ▸).
| C17H21NO4S | |
| Monoclinic, | Mo |
| Cell parameters from 8195 reflections | |
| θ = 3.1–27.9° | |
| µ = 0.21 mm−1 | |
| β = 111.424 (6)° | |
| Block, colourless | |
| 0.5 × 0.2 × 0.05 mm |
| Rigaku Oxford Diffraction SuperNova, single source at offset/far, Eos diffractometer | 3446 independent reflections |
| Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source | 2805 reflections with |
| Mirror monochromator | |
| Detector resolution: 15.9631 pixels mm-1 | θmax = 26.4°, θmin = 2.6° |
| ω scans | |
| Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2018) | |
| 19775 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3446 reflections | Δρmax = 0.53 e Å−3 |
| 216 parameters | Δρmin = −0.46 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S1 | 0.23846 (6) | 0.68160 (12) | 0.53767 (5) | 0.0587 (3) | |
| C2 | 0.28608 (18) | 0.6398 (4) | 0.45764 (17) | 0.0407 (6) | |
| H2 | 0.340156 | 0.575481 | 0.470126 | 0.049* | |
| C3 | 0.23681 (15) | 0.7104 (3) | 0.37324 (15) | 0.0293 (5) | |
| C4 | 0.15812 (17) | 0.8010 (4) | 0.37597 (18) | 0.0405 (6) | |
| H4 | 0.115977 | 0.858331 | 0.325101 | 0.049* | |
| C5 | 0.14966 (17) | 0.7959 (4) | 0.46445 (18) | 0.0393 (6) | |
| H5 | 0.102525 | 0.847582 | 0.478796 | 0.047* | |
| N6 | 0.32530 (15) | 0.3391 (3) | 0.28906 (16) | 0.0406 (5) | |
| H6 | 0.346 (2) | 0.236 (5) | 0.297 (2) | 0.053 (9)* | |
| C7 | 0.39001 (16) | 0.4737 (3) | 0.31863 (17) | 0.0351 (5) | |
| C8 | 0.36158 (15) | 0.6465 (3) | 0.31363 (16) | 0.0302 (5) | |
| C9 | 0.26034 (14) | 0.6872 (3) | 0.28729 (15) | 0.0273 (5) | |
| H9 | 0.246735 | 0.800269 | 0.252562 | 0.033* | |
| C10 | 0.20195 (15) | 0.5392 (3) | 0.22653 (15) | 0.0303 (5) | |
| C11 | 0.23455 (16) | 0.3689 (3) | 0.23509 (17) | 0.0359 (5) | |
| C12 | 0.48666 (18) | 0.4023 (4) | 0.3531 (2) | 0.0533 (8) | |
| H12A | 0.509780 | 0.397134 | 0.419186 | 0.080* | |
| H12B | 0.524659 | 0.480463 | 0.333367 | 0.080* | |
| H12C | 0.487105 | 0.283768 | 0.328792 | 0.080* | |
| C13 | 0.42150 (16) | 0.8049 (3) | 0.33895 (17) | 0.0348 (5) | |
| O14 | 0.39447 (13) | 0.9578 (2) | 0.32155 (16) | 0.0545 (6) | |
| O15 | 0.50981 (12) | 0.7683 (2) | 0.38631 (16) | 0.0516 (5) | |
| C16 | 0.57344 (18) | 0.9188 (4) | 0.4152 (2) | 0.0532 (7) | |
| H16A | 0.553963 | 1.002135 | 0.452336 | 0.064* | |
| H16B | 0.575719 | 0.982674 | 0.361883 | 0.064* | |
| C17 | 0.6646 (2) | 0.8441 (5) | 0.4697 (3) | 0.0831 (13) | |
| H17A | 0.683923 | 0.764533 | 0.431803 | 0.125* | |
| H17B | 0.661164 | 0.778721 | 0.521443 | 0.125* | |
| H17C | 0.707965 | 0.940521 | 0.491285 | 0.125* | |
| C18 | 0.10811 (16) | 0.5808 (4) | 0.16274 (16) | 0.0363 (5) | |
| O19 | 0.05131 (14) | 0.4733 (3) | 0.11903 (16) | 0.0646 (7) | |
| O20 | 0.09182 (12) | 0.7592 (2) | 0.15614 (12) | 0.0410 (4) | |
| C21 | 0.00100 (19) | 0.8172 (5) | 0.0952 (2) | 0.0525 (7) | |
| H21A | −0.020354 | 0.738253 | 0.042024 | 0.063* | |
| H21B | 0.005081 | 0.938003 | 0.073416 | 0.063* | |
| C22 | −0.0661 (3) | 0.8156 (6) | 0.1416 (3) | 0.0767 (11) | |
| H22A | −0.124239 | 0.858116 | 0.099750 | 0.115* | |
| H22B | −0.044950 | 0.892617 | 0.194641 | 0.115* | |
| H22C | −0.072715 | 0.695134 | 0.160476 | 0.115* | |
| C23 | 0.1849 (2) | 0.2020 (4) | 0.1900 (2) | 0.0542 (8) | |
| H23A | 0.218986 | 0.098199 | 0.220459 | 0.081* | |
| H23B | 0.178354 | 0.200892 | 0.126401 | 0.081* | |
| H23C | 0.125325 | 0.199968 | 0.194332 | 0.081* |
| S1 | 0.0677 (5) | 0.0662 (6) | 0.0442 (4) | 0.0079 (4) | 0.0228 (4) | 0.0059 (3) |
| C2 | 0.0385 (13) | 0.0430 (14) | 0.0386 (13) | 0.0084 (11) | 0.0117 (10) | 0.0040 (11) |
| C3 | 0.0288 (10) | 0.0250 (11) | 0.0327 (11) | −0.0019 (8) | 0.0094 (9) | −0.0028 (8) |
| C4 | 0.0339 (12) | 0.0462 (14) | 0.0391 (13) | 0.0080 (11) | 0.0104 (10) | −0.0014 (11) |
| C5 | 0.0313 (12) | 0.0424 (14) | 0.0466 (14) | 0.0033 (10) | 0.0169 (11) | −0.0069 (11) |
| N6 | 0.0372 (11) | 0.0225 (10) | 0.0547 (13) | 0.0035 (8) | 0.0082 (10) | 0.0007 (9) |
| C7 | 0.0298 (11) | 0.0306 (12) | 0.0422 (13) | 0.0026 (9) | 0.0101 (10) | 0.0014 (10) |
| C8 | 0.0266 (11) | 0.0267 (11) | 0.0362 (11) | 0.0012 (8) | 0.0100 (9) | 0.0014 (9) |
| C9 | 0.0269 (10) | 0.0209 (10) | 0.0333 (11) | 0.0021 (8) | 0.0098 (9) | 0.0024 (8) |
| C10 | 0.0289 (11) | 0.0289 (11) | 0.0314 (11) | −0.0019 (9) | 0.0091 (9) | 0.0004 (9) |
| C11 | 0.0350 (12) | 0.0312 (12) | 0.0399 (12) | −0.0025 (10) | 0.0116 (10) | −0.0027 (10) |
| C12 | 0.0359 (14) | 0.0342 (14) | 0.080 (2) | 0.0093 (11) | 0.0095 (13) | −0.0009 (14) |
| C13 | 0.0295 (11) | 0.0292 (12) | 0.0465 (13) | 0.0007 (9) | 0.0146 (10) | 0.0007 (10) |
| O14 | 0.0375 (10) | 0.0254 (9) | 0.0918 (15) | 0.0001 (7) | 0.0134 (10) | 0.0048 (9) |
| O15 | 0.0300 (9) | 0.0301 (9) | 0.0830 (15) | −0.0027 (7) | 0.0068 (9) | 0.0011 (9) |
| C16 | 0.0378 (14) | 0.0339 (14) | 0.081 (2) | −0.0091 (11) | 0.0137 (13) | 0.0000 (14) |
| C17 | 0.0435 (17) | 0.056 (2) | 0.124 (3) | −0.0095 (15) | 0.0001 (19) | 0.009 (2) |
| C18 | 0.0321 (11) | 0.0432 (14) | 0.0312 (11) | 0.0001 (10) | 0.0084 (9) | −0.0009 (10) |
| O19 | 0.0429 (11) | 0.0552 (13) | 0.0715 (14) | −0.0041 (10) | −0.0079 (10) | −0.0129 (11) |
| O20 | 0.0338 (9) | 0.0420 (10) | 0.0395 (9) | 0.0080 (7) | 0.0043 (7) | 0.0042 (7) |
| C21 | 0.0391 (14) | 0.0634 (19) | 0.0449 (15) | 0.0146 (13) | 0.0035 (12) | 0.0102 (13) |
| C22 | 0.055 (2) | 0.091 (3) | 0.084 (3) | 0.0277 (19) | 0.0258 (18) | 0.005 (2) |
| C23 | 0.0489 (16) | 0.0326 (14) | 0.073 (2) | −0.0062 (12) | 0.0128 (14) | −0.0139 (13) |
| S1—C2 | 1.701 (3) | C12—H12C | 0.9600 |
| S1—C5 | 1.674 (3) | C13—O14 | 1.208 (3) |
| C2—H2 | 0.9300 | C13—O15 | 1.338 (3) |
| C2—C3 | 1.364 (3) | O15—C16 | 1.456 (3) |
| C3—C4 | 1.420 (3) | C16—H16A | 0.9700 |
| C3—C9 | 1.525 (3) | C16—H16B | 0.9700 |
| C4—H4 | 0.9300 | C16—C17 | 1.479 (4) |
| C4—C5 | 1.434 (4) | C17—H17A | 0.9600 |
| C5—H5 | 0.9300 | C17—H17B | 0.9600 |
| N6—H6 | 0.82 (4) | C17—H17C | 0.9600 |
| N6—C7 | 1.379 (3) | C18—O19 | 1.205 (3) |
| N6—C11 | 1.381 (3) | C18—O20 | 1.347 (3) |
| C7—C8 | 1.352 (3) | O20—C21 | 1.459 (3) |
| C7—C12 | 1.507 (3) | C21—H21A | 0.9700 |
| C8—C9 | 1.518 (3) | C21—H21B | 0.9700 |
| C8—C13 | 1.468 (3) | C21—C22 | 1.479 (5) |
| C9—H9 | 0.9800 | C22—H22A | 0.9600 |
| C9—C10 | 1.521 (3) | C22—H22B | 0.9600 |
| C10—C11 | 1.353 (3) | C22—H22C | 0.9600 |
| C10—C18 | 1.477 (3) | C23—H23A | 0.9600 |
| C11—C23 | 1.496 (3) | C23—H23B | 0.9600 |
| C12—H12A | 0.9600 | C23—H23C | 0.9600 |
| C12—H12B | 0.9600 | ||
| C5—S1—C2 | 94.05 (12) | H12B—C12—H12C | 109.5 |
| S1—C2—H2 | 123.5 | O14—C13—C8 | 123.8 (2) |
| C3—C2—S1 | 113.10 (19) | O14—C13—O15 | 121.5 (2) |
| C3—C2—H2 | 123.5 | O15—C13—C8 | 114.7 (2) |
| C2—C3—C4 | 110.2 (2) | C13—O15—C16 | 118.0 (2) |
| C2—C3—C9 | 124.8 (2) | O15—C16—H16A | 110.2 |
| C4—C3—C9 | 124.9 (2) | O15—C16—H16B | 110.2 |
| C3—C4—H4 | 123.1 | O15—C16—C17 | 107.4 (2) |
| C3—C4—C5 | 113.8 (2) | H16A—C16—H16B | 108.5 |
| C5—C4—H4 | 123.1 | C17—C16—H16A | 110.2 |
| S1—C5—H5 | 125.6 | C17—C16—H16B | 110.2 |
| C4—C5—S1 | 108.88 (18) | C16—C17—H17A | 109.5 |
| C4—C5—H5 | 125.6 | C16—C17—H17B | 109.5 |
| C7—N6—H6 | 115 (2) | C16—C17—H17C | 109.5 |
| C7—N6—C11 | 123.8 (2) | H17A—C17—H17B | 109.5 |
| C11—N6—H6 | 120 (2) | H17A—C17—H17C | 109.5 |
| N6—C7—C12 | 112.6 (2) | H17B—C17—H17C | 109.5 |
| C8—C7—N6 | 118.9 (2) | O19—C18—C10 | 126.2 (2) |
| C8—C7—C12 | 128.5 (2) | O19—C18—O20 | 121.9 (2) |
| C7—C8—C9 | 119.7 (2) | O20—C18—C10 | 111.8 (2) |
| C7—C8—C13 | 125.5 (2) | C18—O20—C21 | 117.0 (2) |
| C13—C8—C9 | 114.60 (19) | O20—C21—H21A | 109.2 |
| C3—C9—H9 | 108.4 | O20—C21—H21B | 109.2 |
| C8—C9—C3 | 110.47 (18) | O20—C21—C22 | 112.2 (3) |
| C8—C9—H9 | 108.4 | H21A—C21—H21B | 107.9 |
| C8—C9—C10 | 110.90 (18) | C22—C21—H21A | 109.2 |
| C10—C9—C3 | 110.21 (18) | C22—C21—H21B | 109.2 |
| C10—C9—H9 | 108.4 | C21—C22—H22A | 109.5 |
| C11—C10—C9 | 119.68 (19) | C21—C22—H22B | 109.5 |
| C11—C10—C18 | 120.6 (2) | C21—C22—H22C | 109.5 |
| C18—C10—C9 | 119.6 (2) | H22A—C22—H22B | 109.5 |
| N6—C11—C23 | 113.4 (2) | H22A—C22—H22C | 109.5 |
| C10—C11—N6 | 118.6 (2) | H22B—C22—H22C | 109.5 |
| C10—C11—C23 | 128.0 (2) | C11—C23—H23A | 109.5 |
| C7—C12—H12A | 109.5 | C11—C23—H23B | 109.5 |
| C7—C12—H12B | 109.5 | C11—C23—H23C | 109.5 |
| C7—C12—H12C | 109.5 | H23A—C23—H23B | 109.5 |
| H12A—C12—H12B | 109.5 | H23A—C23—H23C | 109.5 |
| H12A—C12—H12C | 109.5 | H23B—C23—H23C | 109.5 |
| S1—C2—C3—C4 | 0.1 (3) | C9—C3—C4—C5 | 177.0 (2) |
| S1—C2—C3—C9 | −177.09 (17) | C9—C8—C13—O14 | −16.0 (4) |
| C2—S1—C5—C4 | −0.1 (2) | C9—C8—C13—O15 | 161.9 (2) |
| C2—C3—C4—C5 | −0.2 (3) | C9—C10—C11—N6 | −9.6 (4) |
| C2—C3—C9—C8 | −23.5 (3) | C9—C10—C11—C23 | 172.7 (3) |
| C2—C3—C9—C10 | 99.4 (3) | C9—C10—C18—O19 | −170.8 (3) |
| C3—C4—C5—S1 | 0.2 (3) | C9—C10—C18—O20 | 10.6 (3) |
| C3—C9—C10—C11 | −93.6 (3) | C10—C18—O20—C21 | −179.8 (2) |
| C3—C9—C10—C18 | 82.7 (2) | C11—N6—C7—C8 | 15.7 (4) |
| C4—C3—C9—C8 | 159.7 (2) | C11—N6—C7—C12 | −164.1 (3) |
| C4—C3—C9—C10 | −77.4 (3) | C11—C10—C18—O19 | 5.5 (4) |
| C5—S1—C2—C3 | 0.0 (2) | C11—C10—C18—O20 | −173.1 (2) |
| N6—C7—C8—C9 | 7.6 (4) | C12—C7—C8—C9 | −172.6 (3) |
| N6—C7—C8—C13 | −177.6 (2) | C12—C7—C8—C13 | 2.2 (4) |
| C7—N6—C11—C10 | −14.7 (4) | C13—C8—C9—C3 | −80.8 (2) |
| C7—N6—C11—C23 | 163.4 (3) | C13—C8—C9—C10 | 156.7 (2) |
| C7—C8—C9—C3 | 94.5 (3) | C13—O15—C16—C17 | 177.2 (3) |
| C7—C8—C9—C10 | −28.0 (3) | O14—C13—O15—C16 | −1.1 (4) |
| C7—C8—C13—O14 | 169.0 (3) | C18—C10—C11—N6 | 174.1 (2) |
| C7—C8—C13—O15 | −13.1 (4) | C18—C10—C11—C23 | −3.6 (4) |
| C8—C9—C10—C11 | 29.0 (3) | C18—O20—C21—C22 | 85.3 (3) |
| C8—C9—C10—C18 | −154.6 (2) | O19—C18—O20—C21 | 1.5 (4) |
| C8—C13—O15—C16 | −179.1 (2) |
| H··· | ||||
| N6—H6···O14i | 0.82 (4) | 2.19 (4) | 3.010 (3) | 176 (3) |
| C5—H5···O19ii | 0.93 | 2.52 | 3.220 (4) | 133 |
| C9—H9···O20 | 0.98 | 2.36 | 2.739 (3) | 102 |
| C12—H12 | 0.96 | 2.33 | 2.768 (3) | 107 |
| C23—H23 | 0.96 | 2.42 | 2.826 (4) | 105 |
| C17—H17 | 0.96 | 2.79 | 3.720 (4) | 162 |