| Literature DB >> 31871740 |
Supaphorn Thammakan1, Kitt Panyarat1, Apinpus Rujiwatra1,2.
Abstract
The non-porous three-dimensional structure of poly[(μ5-2-amino-benzene-1,4-di-carboxyl-ato)(μ6-oxalato)(oxomium)europium(III)], [Eu(C8H5NO4)(C2O4)(H3O)] n or [EuIII(NH2-BDC)(ox)(H3O)] n (NH2-BDC2- = 2-amino-terephthalate and ox2- = oxalate) is constructed from two-dimensional layers of EuIII-carboxyl-ate-oxalate, which are connected by NH2-BDC2- pillars. The basic structural unit of the layer is an edge-sharing dimer of TPRS-{EuIIIO9}, which is assembled through the ox2- moiety. The intra-layer void is partially occupied by TPR-{EuIIIO6} motifs. Weak C-H⋯O and strong, classical intra-molecular N-H⋯O and inter-molecular O-H⋯O hydrogen-bonding inter-actions, as well as weak π-π stacking inter-actions, affix the organic pillars within the framework. The two-dimensional layer can be simplified to a uninodal 4-connected sql/Shubnikov tetra-gonal plane net with point symbol {44.62}. © Thammakan et al. 2019.Entities:
Keywords: 2-aminoterephthalic acid; coordination polymer; crystal structure; lanthanide; oxalic acid
Year: 2019 PMID: 31871740 PMCID: PMC6895952 DOI: 10.1107/S2056989019014713
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Views of (a) an extended asymmetric unit of I drawn using 60% probability ellipsoids and the coordination environments about (b) Eu1A and (c) Eu1B. [Symmetry codes: (i) −x, 1 − y, −z; (ii) 1 − x, + y, − z; (iii) −x, − + y, − z; (iv) x, − y, − + z; (v) x, − y, + z; (vi) 1 − x, − + y, − z; (vii) 1 − x, 1 − y, 1 − z; (viii) 1 − x, − y, + z.]
Figure 2Depictions of coordination modes adopted by NH2—BDC2− and ox2−; (a) with (b) without Eu1B.
Figure 3The three-dimensional framework structure of I.
Figure 4Polyhedral and space-filling representations of the EuIII–oxalate–carboxylate layers (a) with TPR-{EuIIIO6} motifs and (b) without TPR-{EuIIIO6} motif.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O9 | 1.11 (5) | 1.81 (5) | 2.904 (4) | 171 (5) |
| O9 | 1.10 (5) | 1.87 (5) | 2.943 (4) | 163 (4) |
| C6—H6⋯O3 | 0.93 | 2.47 | 2.781 (6) | 100 |
| N1—H1 | 0.86 | 2.03 | 2.736 (16) | 139 |
Symmetry codes: (i) ; (ii) .
Figure 5Views of (a) the hydrogen-bonding interactions and (b) the π–π interactions.
Figure 6The simplified two- and three-dimensional topologies of I.
Experimental details
| Crystal data | |
| Chemical formula | [Eu(C8H5NO4)(C2O4)(H3O)] |
|
| 436.32 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 11.8348 (3), 11.3208 (3), 10.6531 (3) |
| β (°) | 110.275 (3) |
|
| 1338.86 (7) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 4.73 |
| Crystal size (mm) | 0.2 × 0.05 × 0.05 |
| Data collection | |
| Diffractometer | Rigaku OD SuperNova, single source at offset/far, HyPix3000 |
| Absorption correction | Multi-scan ( |
|
| 0.753, 0.789 |
| No. of measured, independent and observed [ | 15479, 2882, 2458 |
|
| 0.050 |
| (sin θ/λ)max (Å−1) | 0.647 |
| Refinement | |
|
| 0.028, 0.067, 1.09 |
| No. of reflections | 2882 |
| No. of parameters | 222 |
| No. of restraints | 4 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.61, −0.54 |
Computer programs: CrysAlis PRO (Rigaku OD, 2018 ▸), SHELXT (Sheldrick, 2015b ▸), SHELXL (Sheldrick, 2015a ▸) and OLEX2 (Dolomanov et al., 2009 ▸).
| [Eu(C8H5NO4)(C2O4)(H3O)] | |
| Monoclinic, | Mo |
| Cell parameters from 9488 reflections | |
| θ = 1.8–27.3° | |
| µ = 4.73 mm−1 | |
| β = 110.275 (3)° | |
| Block, clear light yellow | |
| 0.2 × 0.05 × 0.05 mm |
| Rigaku OD SuperNova, single source at offset/far, HyPix3000 diffractometer | 2458 reflections with |
| Radiation source: micro-focus sealed X-ray tube | |
| ω scans | θmax = 27.4°, θmin = 1.8° |
| Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2018) | |
| 15479 measured reflections | |
| 2882 independent reflections |
| Refinement on | 4 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2882 reflections | Δρmax = 0.61 e Å−3 |
| 222 parameters | Δρmin = −0.54 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| Eu1A | 0.07429 (2) | 0.61284 (2) | 0.15674 (2) | 0.01311 (9) | 0.8558 (8) |
| O6 | 0.0486 (2) | 0.7311 (2) | 0.3456 (2) | 0.0298 (6) | |
| O8 | −0.0221 (2) | 0.89620 (19) | 0.4069 (3) | 0.0248 (6) | |
| O5 | −0.0175 (2) | 0.8135 (2) | 0.0928 (2) | 0.0314 (6) | |
| O2 | 0.1449 (2) | 0.4078 (2) | −0.1090 (3) | 0.0315 (7) | |
| O7 | −0.0772 (2) | 0.9814 (2) | 0.1603 (2) | 0.0298 (6) | |
| O4 | 0.7236 (2) | 0.1331 (2) | 0.1432 (3) | 0.0356 (7) | |
| O1 | 0.2130 (2) | 0.5301 (3) | 0.0649 (3) | 0.0385 (7) | |
| O3 | 0.7668 (2) | 0.2640 (2) | 0.3050 (3) | 0.0366 (7) | |
| C10 | 0.0008 (3) | 0.8307 (3) | 0.3236 (4) | 0.0212 (8) | |
| C1 | 0.2274 (3) | 0.4463 (4) | −0.0068 (4) | 0.0278 (9) | |
| C9 | −0.0344 (3) | 0.8795 (3) | 0.1784 (4) | 0.0229 (9) | |
| C8 | 0.6941 (3) | 0.2224 (4) | 0.1960 (4) | 0.0290 (9) | |
| C2 | 0.3499 (3) | 0.3911 (3) | 0.0360 (4) | 0.0319 (10) | |
| C5 | 0.5750 (3) | 0.2802 (4) | 0.1344 (4) | 0.0353 (10) | |
| C6 | 0.5557 (4) | 0.3900 (4) | 0.1808 (5) | 0.0502 (14) | |
| H6 | 0.619345 | 0.426877 | 0.246414 | 0.060* | |
| C3 | 0.3677 (4) | 0.2839 (4) | −0.0150 (5) | 0.0513 (13) | |
| C7 | 0.4454 (4) | 0.4470 (4) | 0.1332 (5) | 0.0480 (12) | |
| C4 | 0.4805 (4) | 0.2271 (4) | 0.0321 (5) | 0.0528 (13) | |
| N2 | 0.4834 (8) | 0.1125 (8) | −0.0128 (12) | 0.066 (3) | 0.439 (6) |
| H2A | 0.512716 | 0.113790 | −0.078500 | 0.080* | 0.439 (6) |
| H2B | 0.531521 | 0.063870 | 0.047841 | 0.080* | 0.439 (6) |
| N3 | 0.4511 (10) | 0.5604 (13) | 0.1717 (14) | 0.066 (3) | 0.312 (6) |
| H3A | 0.407927 | 0.583997 | 0.230300 | 0.080* | 0.312 (6) |
| H3B | 0.527520 | 0.590092 | 0.221251 | 0.080* | 0.312 (6) |
| N1 | 0.2993 (12) | 0.2381 (15) | −0.1365 (15) | 0.066 (3) | 0.261 (6) |
| H1A | 0.286630 | 0.164575 | −0.125872 | 0.080* | 0.261 (6) |
| H1B | 0.231669 | 0.274954 | −0.165662 | 0.080* | 0.261 (6) |
| Eu1B | 0.82330 (16) | 0.39654 (13) | 0.47691 (17) | 0.0427 (7) | 0.1442 (8) |
| O9W | 0.8080 (3) | 0.5707 (3) | 0.3580 (3) | 0.0593 (9) | |
| H9WA | 0.816 (5) | 0.581 (4) | 0.258 (4) | 0.089* | |
| H9WB | 0.881 (4) | 0.620 (4) | 0.433 (5) | 0.089* | |
| H9WC | 0.725 (4) | 0.578 (6) | 0.383 (7) | 0.15 (3)* |
| Eu1A | 0.01489 (13) | 0.00998 (14) | 0.01356 (13) | −0.00037 (7) | 0.00379 (9) | −0.00035 (8) |
| O6 | 0.0446 (16) | 0.0207 (15) | 0.0244 (14) | 0.0096 (12) | 0.0121 (12) | 0.0042 (12) |
| O8 | 0.0355 (15) | 0.0197 (15) | 0.0206 (15) | 0.0018 (11) | 0.0114 (13) | −0.0022 (11) |
| O5 | 0.0494 (17) | 0.0224 (16) | 0.0230 (14) | 0.0099 (13) | 0.0133 (13) | 0.0000 (12) |
| O2 | 0.0215 (14) | 0.0420 (19) | 0.0291 (16) | −0.0002 (12) | 0.0064 (12) | −0.0073 (13) |
| O7 | 0.0425 (16) | 0.0182 (15) | 0.0244 (14) | 0.0085 (12) | 0.0060 (12) | 0.0020 (12) |
| O4 | 0.0320 (16) | 0.0368 (18) | 0.0329 (17) | 0.0101 (12) | 0.0045 (13) | −0.0070 (13) |
| O1 | 0.0243 (14) | 0.048 (2) | 0.0420 (17) | 0.0037 (13) | 0.0095 (13) | −0.0161 (15) |
| O3 | 0.0306 (15) | 0.0333 (18) | 0.0357 (17) | 0.0088 (13) | −0.0014 (13) | −0.0089 (14) |
| C10 | 0.0242 (19) | 0.014 (2) | 0.026 (2) | −0.0034 (16) | 0.0088 (16) | −0.0023 (17) |
| C1 | 0.025 (2) | 0.030 (2) | 0.029 (2) | −0.0008 (18) | 0.0107 (18) | −0.0008 (19) |
| C9 | 0.026 (2) | 0.021 (2) | 0.017 (2) | 0.0012 (16) | 0.0008 (17) | 0.0012 (16) |
| C8 | 0.028 (2) | 0.027 (2) | 0.028 (2) | 0.0023 (18) | 0.0054 (18) | −0.0028 (19) |
| C2 | 0.025 (2) | 0.033 (3) | 0.035 (2) | 0.0063 (17) | 0.0074 (19) | −0.0015 (19) |
| C5 | 0.030 (2) | 0.035 (3) | 0.036 (2) | 0.0084 (18) | 0.005 (2) | −0.004 (2) |
| C6 | 0.031 (3) | 0.044 (3) | 0.056 (3) | 0.013 (2) | −0.010 (2) | −0.020 (2) |
| C3 | 0.031 (2) | 0.048 (3) | 0.058 (3) | 0.009 (2) | −0.006 (2) | −0.017 (3) |
| C7 | 0.035 (2) | 0.046 (3) | 0.052 (3) | 0.015 (2) | 0.001 (2) | −0.016 (3) |
| C4 | 0.042 (3) | 0.053 (3) | 0.049 (3) | 0.018 (2) | −0.003 (2) | −0.019 (3) |
| N2 | 0.033 (4) | 0.064 (5) | 0.081 (6) | 0.026 (3) | −0.007 (4) | −0.040 (4) |
| N3 | 0.033 (4) | 0.064 (5) | 0.081 (6) | 0.026 (3) | −0.007 (4) | −0.040 (4) |
| N1 | 0.033 (4) | 0.064 (5) | 0.081 (6) | 0.026 (3) | −0.007 (4) | −0.040 (4) |
| Eu1B | 0.0590 (12) | 0.0319 (11) | 0.0319 (10) | −0.0013 (7) | 0.0090 (8) | −0.0028 (7) |
| O9W | 0.076 (3) | 0.056 (2) | 0.044 (2) | −0.014 (2) | 0.0174 (19) | 0.0008 (19) |
| Eu1A—Eu1Ai | 4.0868 (4) | O4—C8 | 1.264 (4) |
| Eu1A—O6 | 2.521 (2) | O4—Eu1Bvii | 2.468 (3) |
| Eu1A—O8ii | 2.562 (2) | O1—C1 | 1.266 (4) |
| Eu1A—O8iii | 2.508 (3) | O3—C8 | 1.272 (4) |
| Eu1A—O5 | 2.508 (2) | O3—Eu1B | 2.281 (3) |
| Eu1A—O2i | 2.476 (2) | C10—C9 | 1.558 (5) |
| Eu1A—O7ii | 2.444 (3) | C1—C2 | 1.497 (5) |
| Eu1A—O4iv | 2.604 (3) | C8—C5 | 1.484 (5) |
| Eu1A—O1 | 2.375 (2) | C2—C3 | 1.375 (5) |
| Eu1A—O3iv | 2.470 (3) | C2—C7 | 1.393 (6) |
| O6—C10 | 1.247 (4) | C5—C6 | 1.386 (6) |
| O6—Eu1Bv | 2.445 (3) | C5—C4 | 1.398 (6) |
| O8—C10 | 1.256 (4) | C6—C7 | 1.386 (6) |
| O5—C9 | 1.247 (4) | C3—C4 | 1.408 (6) |
| O5—Eu1Biv | 2.811 (3) | C3—N1 | 1.368 (14) |
| O2—C1 | 1.261 (4) | C7—N3 | 1.343 (13) |
| O7—C9 | 1.247 (4) | C4—N2 | 1.387 (8) |
| O7—Eu1Bvi | 2.349 (3) | Eu1B—O9W | 2.317 (4) |
| O6—Eu1A—Eu1Ai | 147.91 (6) | Eu1Bvi—O7—Eu1Aix | 99.74 (10) |
| O6—Eu1A—O8ii | 129.40 (8) | C8—O4—Eu1Ax | 91.4 (2) |
| O6—Eu1A—O4iv | 68.33 (9) | C8—O4—Eu1Bvii | 134.7 (3) |
| O8iii—Eu1A—Eu1Ai | 36.75 (5) | Eu1Bvii—O4—Eu1Ax | 92.50 (9) |
| O8ii—Eu1A—Eu1Ai | 35.85 (6) | C1—O1—Eu1A | 143.2 (2) |
| O8iii—Eu1A—O6 | 137.05 (8) | C8—O3—Eu1Ax | 97.5 (2) |
| O8iii—Eu1A—O8ii | 72.60 (9) | C8—O3—Eu1B | 153.3 (3) |
| O8ii—Eu1A—O4iv | 111.70 (8) | Eu1B—O3—Eu1Ax | 109.19 (11) |
| O8iii—Eu1A—O4iv | 145.39 (9) | O6—C10—O8 | 126.6 (3) |
| O5—Eu1A—Eu1Ai | 108.73 (6) | O6—C10—C9 | 117.1 (3) |
| O5—Eu1A—O6 | 64.84 (8) | O8—C10—C9 | 116.3 (3) |
| O5—Eu1A—O8iii | 75.76 (8) | O2—C1—O1 | 123.6 (3) |
| O5—Eu1A—O8ii | 138.85 (8) | O2—C1—C2 | 119.8 (4) |
| O5—Eu1A—O4iv | 109.32 (8) | O1—C1—C2 | 116.6 (3) |
| O2i—Eu1A—Eu1Ai | 69.48 (6) | O5—C9—C10 | 117.2 (3) |
| O2i—Eu1A—O6 | 78.84 (8) | O7—C9—O5 | 126.9 (4) |
| O2i—Eu1A—O8iii | 73.70 (9) | O7—C9—C10 | 115.9 (3) |
| O2i—Eu1A—O8ii | 73.49 (8) | O4—C8—Eu1Ax | 63.02 (19) |
| O2i—Eu1A—O5 | 72.87 (8) | O4—C8—O3 | 119.9 (3) |
| O2i—Eu1A—O4iv | 140.91 (9) | O4—C8—C5 | 121.5 (3) |
| O7ii—Eu1A—Eu1Ai | 98.87 (6) | O3—C8—Eu1Ax | 56.94 (18) |
| O7ii—Eu1A—O6 | 70.07 (9) | O3—C8—C5 | 118.6 (4) |
| O7ii—Eu1A—O8ii | 64.12 (8) | C5—C8—Eu1Ax | 174.2 (3) |
| O7ii—Eu1A—O8iii | 134.20 (8) | C3—C2—C1 | 120.9 (4) |
| O7ii—Eu1A—O5 | 130.79 (9) | C3—C2—C7 | 119.9 (4) |
| O7ii—Eu1A—O2i | 80.22 (9) | C7—C2—C1 | 119.1 (4) |
| O7ii—Eu1A—O4iv | 69.26 (8) | C6—C5—C8 | 119.1 (4) |
| O7ii—Eu1A—O3iv | 119.41 (9) | C6—C5—C4 | 118.5 (4) |
| O4iv—Eu1A—Eu1Ai | 137.47 (6) | C4—C5—C8 | 122.4 (4) |
| O1—Eu1A—Eu1Ai | 65.16 (6) | C5—C6—C7 | 122.5 (4) |
| O1—Eu1A—O6 | 146.09 (8) | C2—C3—C4 | 121.2 (4) |
| O1—Eu1A—O8ii | 69.59 (9) | N1—C3—C2 | 125.9 (7) |
| O1—Eu1A—O8iii | 70.84 (8) | N1—C3—C4 | 109.9 (7) |
| O1—Eu1A—O5 | 122.76 (9) | C6—C7—C2 | 118.6 (4) |
| O1—Eu1A—O2i | 134.63 (9) | N3—C7—C2 | 127.1 (6) |
| O1—Eu1A—O7ii | 105.55 (9) | N3—C7—C6 | 113.1 (6) |
| O1—Eu1A—O4iv | 78.60 (9) | C5—C4—C3 | 119.0 (4) |
| O1—Eu1A—O3iv | 75.28 (9) | N2—C4—C5 | 124.2 (5) |
| O3iv—Eu1A—Eu1Ai | 130.96 (7) | N2—C4—C3 | 116.0 (5) |
| O3iv—Eu1A—O6 | 78.21 (9) | O6v—Eu1B—O5x | 70.24 (9) |
| O3iv—Eu1A—O8iii | 104.11 (8) | O6v—Eu1B—O4xi | 71.76 (10) |
| O3iv—Eu1A—O8ii | 143.79 (9) | O7xii—Eu1B—O6v | 72.95 (10) |
| O3iv—Eu1A—O5 | 69.54 (8) | O7xii—Eu1B—O5x | 101.31 (10) |
| O3iv—Eu1A—O2i | 141.55 (9) | O7xii—Eu1B—O4xi | 73.14 (10) |
| O3iv—Eu1A—O4iv | 51.17 (8) | O4xi—Eu1B—O5x | 141.46 (10) |
| C10—O6—Eu1A | 120.2 (2) | O3—Eu1B—O6v | 99.37 (11) |
| C10—O6—Eu1Bv | 143.1 (2) | O3—Eu1B—O5x | 66.84 (9) |
| C10—O8—Eu1Aviii | 126.6 (2) | O3—Eu1B—O7xii | 167.83 (13) |
| C10—O8—Eu1Aix | 118.0 (2) | O3—Eu1B—O4xi | 114.01 (12) |
| C9—O5—Eu1A | 120.6 (2) | O3—Eu1B—O9W | 100.09 (12) |
| C9—O5—Eu1Biv | 110.2 (2) | O9W—Eu1B—O6v | 146.74 (13) |
| C1—O2—Eu1Ai | 130.7 (2) | O9W—Eu1B—O5x | 93.23 (12) |
| C9—O7—Eu1Aix | 123.2 (2) | O9W—Eu1B—O7xii | 82.84 (12) |
| C9—O7—Eu1Bvi | 137.1 (2) | O9W—Eu1B—O4xi | 122.82 (13) |
| H··· | ||||
| O9 | 1.11 (5) | 1.81 (5) | 2.904 (4) | 171 (5) |
| O9 | 1.10 (5) | 1.87 (5) | 2.943 (4) | 163 (4) |
| C6—H6···O3 | 0.93 | 2.47 | 2.781 (6) | 100 |
| N1—H1 | 0.86 | 2.03 | 2.736 (16) | 139 |