| Literature DB >> 31866851 |
Pascual Sánchez-Juan1,2, Sonia Moreno1,3, Itziar de Rojas1,3, Isabel Hernández1,3, Sergi Valero1,3, Montse Alegret1,3, Laura Montrreal1, Pablo García González1,3, Carmen Lage1,2, Sara López-García1,2, Eloy Rodrííguez-Rodríguez1,2, Adelina Orellana1, Lluís Tárraga1,3, Mercè Boada1,3, Agustín Ruiz1,3.
Abstract
An ancestral inversion of 900 kb on chromosome 17q21, which includes the microtubule-associated protein tau (MAPT) gene, defines two haplotype clades in Caucasians (H1 and H2). The H1 haplotype has been linked inconsistently with AD. In a previous study, we showed that an SNP tagging this haplotype (rs1800547) was associated with AD risk in a large population from the Dementia Genetics Spanish Consortium (DEGESCO) including 4435 cases and 6147 controls. The association was mainly driven by individuals that were non-carriers of the APOE ε4 allele. Our aim was to replicate our previous findings in an independent sample of 4124 AD cases and 3290 controls from Spain (GR@ACE project) and to analyze the effect of the H1 sub-haplotype structure on the risk of AD. The H1 haplotype was associated with AD risk (OR = 1.12; p = 0.0025). Stratification analysis showed that this association was mainly driven by the APOE ε4 non-carriers (OR = 1.15; p = 0.0022). Pooled analysis of both Spanish datasets (n = 17,996) showed that the highest AD risk related to the MAPT H1/H2 haplotype was in those individuals that were the oldest [third tertile (>77 years)] and did not carry APOE ε4 allele (p = 0.001). We did not find a significant association between H1 sub-haplotypes and AD. H1c was nominally associated but lost statistical significance after adjusting by population sub-structure. Our results are consistent with the hypothesis that genetic variants linked to the MAPT H1/H2 are tracking a genuine risk allele for AD. The fact that this association is stronger in APOE ε4 non-carriers partially explains previous controversial results and might be related to a slower alternative causal pathway less dependent on brain amyloid load.Entities:
Keywords: APOE; Alzheimer’s disease; H1H2; MAPT; genetic association
Year: 2019 PMID: 31866851 PMCID: PMC6905227 DOI: 10.3389/fnagi.2019.00327
Source DB: PubMed Journal: Front Aging Neurosci ISSN: 1663-4365 Impact factor: 5.750
Hardy–Weinberg equilibrium test in controls.
| rs1467967 | 264/1346/1679 | 0.41 | 0.41 | 0.83 |
| rs242557 | 346/1426/1517 | 0.43 | 0.44 | 0.69 |
| rs3785883 | 128/955/2206 | 0.29 | 0.30 | 0.06 |
| rs2471738 | 89/991/2209 | 0.30 | 0.29 | 0.08 |
| rs8070723 | 292/1328/1669 | 0.40 | 0.41 | 0.24 |
| rs7521 | 614/1564/1111 | 0.48 | 0.49 | 0.13 |
Microtubule-associated protein tau H1/H2 haplotypes and AD risk.
| H2H2 | 290 (8.8) | 328 (8.0) | 1.12 (1.04–1.20) | ||
| H1H2 | 1324 (40.2) | 1546 (37.5) | |||
| H1H1 | 1676 (50.9) | 2250 (54.6) | |||
| H1 frequency | 0.711 | 0.733 | |||
| H2H2 | 58 (8.3) | 136 (8.3) | 1.07 (0.93–1.23) | ||
| H1H2 | 286 (40.7) | 625 (37.9) | |||
| H1H1 | 358 (51.0) | 887 (53.8) | |||
| H1 frequency | 0.714 | 0.728 | |||
| H2H2 | 232 (9.0) | 190 (7.7) | 1.15 (1.05–1.25) | ||
| H1H2 | 1033 (40.1) | 913 (37.2) | |||
| H1H1 | 1311 (50.9) | 1353 (55.1) | |||
| H1 frequency | 0.709 | 0.737 | |||
| H2H2 | 532 (9.15) | 344 (8.34) | 1.12 (1.05–1.19) | ||
| H1H2 | 2444 (42.03) | 1614 (39.11) | |||
| H1H1 | 2839 (48.82) | 2169 (52.56) | |||
| H1 frequency | 0.698 | 0.721 | |||
| H2H2 | 78 (9.07) | 139 (8.50) | 1.03 (0.91–1.18) | ||
| H1H2 | 345 (40.12) | 655 (40.04) | |||
| H1H1 | 437 (50.81) | 842 (51.47) | |||
| H1 frequency | 0.709 | 0.715 | |||
| H2H2 | 343 (8.46) | 160 (8.16) | 1.14 (1.05–1.24) | ||
| H1H2 | 1701 (41.97) | 730 (37.24) | |||
| H1H1 | 2009 (49.57) | 1070 (54.59) | |||
| H1 frequency | 0.706 | 0.732 | |||
| H2H2 | 822 (9.0) | 672 (8.1) | 1.126 (1.075–1.127) | ||
| H1H2 | 3769 (41.4) | 3160 (38.3) | |||
| H1H1 | 4515 (49.6) | 4419 (53.6) | |||
| H1 frequency | 0.703 | 0.727 | |||
| H2H2 | 136 (8.7) | 275 (8.4) | 1.053 (0.958–1.157) | ||
| H1H2 | 631 (40.4) | 1280 (39.0) | |||
| H1H1 | 795 (50.9) | 1729 (52.6) | |||
| H1 frequency | 0.711 | 0.721 | |||
| H2H2 | 575 (8.7) | 350 (7.9) | 1.148 (1.08–1.22) | ||
| H1H2 | 2734 (41.2) | 1643 (37.2) | |||
| H1H1 | 3320 (50.1) | 2423 (54.9) | |||
| H1 frequency | 0.707 | 0.735 | |||
Microtubule-associated protein tau sub-haplotypes.
| H1o | AAACAA | 0.022 | 0.021 | 0.63 | 0.47 |
| H1y | AAATAG | 0.013 | 0.011 | 0.31 | 0.22 |
| H1d | AAGCAA | 0.069 | 0.072 | 0.60 | 0.30 |
| H1u | AAGCAG | 0.025 | 0.022 | 0.19 | 0.14 |
| H1q | AAGTAA | 0.012 | 0.013 | 0.52 | 0.22 |
| H1c | AAGTAG | 0.114 | 0.104 | 0.05 | 0.14 |
| H1h | AGACAA | 0.050 | 0.047 | 0.51 | 0.25 |
| H1l | AGACAG | 0.046 | 0.044 | 0.65 | 0.44 |
| H1t | AGATAG | 0.011 | 0.010 | 0.64 | 0.30 |
| H1e | AGGCAA | 0.075 | 0.077 | 0.75 | 0.90 |
| H1j | AGGCAG | 0.016 | 0.016 | 0.78 | 0.95 |
| H2 | AGGCGG | 0.283 | 0.309 | 0.0009 | 0.0008 |
| H1z | GAATAG | 0.014 | 0.011 | 0.12 | 0.07 |
| H1i | GAGCAA | 0.038 | 0.040 | 0.69 | 0.72 |
| H1m | GAGCAG | 0.026 | 0.023 | 0.32 | 0.36 |
| H1f | GGACAA | 0.014 | 0.014 | 0.95 | 0.75 |
| H1v | GGATAG | 0.014 | 0.012 | 0.27 | 0.08 |
| H1b | GGGCAA | 0.159 | 0.156 | 0.60 | 0.31 |
Microtubule-associated protein tau sub-haplotypes stratified by APOE ε4 status.
| H1o | AAACAA | 1.17 | 0.61 | 0.63 |
| H1f | GGACAA | 1.55 | 0.31 | 0.20 |
| H1h | AGACAA | 0.96 | 0.81 | 0.93 |
| H1i | GAGCAA | 1.04 | 0.83 | 0.90 |
| H1d | AAGCAA | 0.85 | 0.26 | 0.18 |
| H1b | GGGCAA | 1.08 | 0.43 | 0.37 |
| H1e | AGGCAA | 1.02 | 0.88 | 0.93 |
| H2 | AGGCGG | 0.93 | 0.28 | 0.23 |
| H1z | GAATAG | 1.77 | 0.14 | 0.10 |
| H1v | GGATAG | 0.95 | 0.86 | 0.92 |
| H1t | AGATAG | 1.46 | 0.37 | 0.28 |
| H1c | AAGTAG | 1.13 | 0.27 | 0.37 |
| H1l | AGACAG | 1.01 | 0.95 | 0.64 |
| H1m | GAGCAG | 1.07 | 0.78 | 0.89 |
| H1u | AAGCAG | 0.91 | 0.71 | 0.76 |
| H1j | AGGCAG | 0.66 | 0.18 | 0.21 |
| H1q | AAGTAA | 1.12 | 0.56 | 0.86 |
| H1g | GAACAA | 0.94 | 0.81 | 0.92 |
| H1o | AAACAA | 1.12 | 0.46 | 0.40 |
| H1f | GGACAA | 0.93 | 0.74 | 0.93 |
| H1h | AGACAA | 1.11 | 0.34 | 0.19 |
| H1i | GAGCAA | 0.89 | 0.37 | 0.46 |
| H1d | AAGCAA | 1.02 | 0.83 | 0.83 |
| H1b | GGGCAA | 1.04 | 0.55 | 0.34 |
| H1e | AGGCAA | 0.94 | 0.46 | 0.90 |
| H2 | AGGCGG | 0.88 | 0.00 | 0.00083 |
| H1z | GAATAG | 1.33 | 0.20 | 0.24 |
| H1y | AAATAG | 1.30 | 0.25 | 0.35 |
| H1v | GGATAG | 1.41 | 0.13 | 0.04 |
| ND | AGATAG | 1.03 | 0.91 | 0.65 |
| H1c | AAGTAG | 1.12 | 0.10 | 0.37 |
| H1l | AGACAG | 1.06 | 0.56 | 0.60 |
| H1m | GAGCAG | 1.21 | 0.20 | 0.33 |
| H1u | AAGCAG | 1.41 | 0.03 | 0.04 |
| H1j | AGGCAG | 1.15 | 0.46 | 0.30 |
FIGURE 1Genotype frequency distribution of the rs1800547 SNP tagging MAPT H1/H2 haplotype stratified by APOE ε4 status and age tertiles.