Literature DB >> 31866694

Materials-by-Design: Computation, Synthesis, and Characterization from Atoms to Structures.

Jingjie Yeo1,2, Gang Seob Jung1, Francisco J Martín-Martínez1, Shengjie Ling1,3, Grace X Gu1, Zhao Qin1, Markus J Buehler1.   

Abstract

In the 50 years that succeeded Richard Feynman's exposition of the idea that there is "plenty of room at the bottom" for manipulating individual atoms for the synthesis and manufacturing processing of materials, the materials-by-design paradigm is being developed gradually through synergistic integration of experimental material synthesis and characterization with predictive computational modeling and optimization. This paper reviews how this paradigm creates the possibility to develop materials according to specific, rational designs from the molecular to the macroscopic scale. We discuss promising techniques in experimental small-scale material synthesis and large-scale fabrication methods to manipulate atomistic or macroscale structures, which can be designed by computational modeling. These include recombinant protein technology to produce peptides and proteins with tailored sequences encoded by recombinant DNA, self-assembly processes induced by conformational transition of proteins, additive manufacturing for designing complex structures, and qualitative and quantitative characterization of materials at different length scales. We describe important material characterization techniques using numerous methods of spectroscopy and microscopy. We detail numerous multi-scale computational modeling techniques that complements these experimental techniques: DFT at the atomistic scale; fully atomistic and coarse-grain molecular dynamics at the molecular to mesoscale; continuum modeling at the macroscale. Additionally, we present case studies that utilize experimental and computational approaches in an integrated manner to broaden our understanding of the properties of two-dimensional materials and materials based on silk and silk-elastin-like proteins.

Entities:  

Keywords:  Materials physics; design; materiomics; modeling; multiscale; resilience

Year:  2018        PMID: 31866694      PMCID: PMC6924929          DOI: 10.1088/1402-4896/aab4e2

Source DB:  PubMed          Journal:  Phys Scr        ISSN: 0031-8949            Impact factor:   2.487


  107 in total

1.  Understanding amyloid aggregation by statistical analysis of atomic force microscopy images.

Authors:  Jozef Adamcik; Jin-Mi Jung; Jérôme Flakowski; Paolo De Los Rios; Giovanni Dietler; Raffaele Mezzenga
Journal:  Nat Nanotechnol       Date:  2010-04-11       Impact factor: 39.213

2.  Electric field effect in atomically thin carbon films.

Authors:  K S Novoselov; A K Geim; S V Morozov; D Jiang; Y Zhang; S V Dubonos; I V Grigorieva; A A Firsov
Journal:  Science       Date:  2004-10-22       Impact factor: 47.728

3.  Vapour phase growth and grain boundary structure of molybdenum disulphide atomic layers.

Authors:  Sina Najmaei; Zheng Liu; Wu Zhou; Xiaolong Zou; Gang Shi; Sidong Lei; Boris I Yakobson; Juan-Carlos Idrobo; Pulickel M Ajayan; Jun Lou
Journal:  Nat Mater       Date:  2013-06-09       Impact factor: 43.841

4.  Experimental analysis of charge redistribution due to chemical bonding by high-resolution transmission electron microscopy.

Authors:  Jannik C Meyer; Simon Kurasch; Hye Jin Park; Viera Skakalova; Daniela Künzel; Axel Gross; Andrey Chuvilin; Gerardo Algara-Siller; Siegmar Roth; Takayuki Iwasaki; Ulrich Starke; Jurgen H Smet; Ute Kaiser
Journal:  Nat Mater       Date:  2011-01-16       Impact factor: 43.841

Review 5.  Overview of current additive manufacturing technologies and selected applications.

Authors:  Timothy J Horn; Ola L A Harrysson
Journal:  Sci Prog       Date:  2012       Impact factor: 2.774

6.  Grains and grain boundaries in highly crystalline monolayer molybdenum disulphide.

Authors:  Arend M van der Zande; Pinshane Y Huang; Daniel A Chenet; Timothy C Berkelbach; YuMeng You; Gwan-Hyoung Lee; Tony F Heinz; David R Reichman; David A Muller; James C Hone
Journal:  Nat Mater       Date:  2013-05-05       Impact factor: 43.841

7.  Effect of Terminal Modification on the Molecular Assembly and Mechanical Properties of Protein-Based Block Copolymers.

Authors:  Matthew M Jacobsen; Olena S Tokareva; Davoud Ebrahimi; Wenwen Huang; Shengjie Ling; Nina Dinjaski; David Li; Marc Simon; Cristian Staii; Markus J Buehler; David L Kaplan; Joyce Y Wong
Journal:  Macromol Biosci       Date:  2017-06-30       Impact factor: 4.979

8.  The MARTINI Coarse-Grained Force Field: Extension to Proteins.

Authors:  Luca Monticelli; Senthil K Kandasamy; Xavier Periole; Ronald G Larson; D Peter Tieleman; Siewert-Jan Marrink
Journal:  J Chem Theory Comput       Date:  2008-05       Impact factor: 6.006

9.  Martini Coarse-Grained Force Field: Extension to DNA.

Authors:  Jaakko J Uusitalo; Helgi I Ingólfsson; Parisa Akhshi; D Peter Tieleman; Siewert J Marrink
Journal:  J Chem Theory Comput       Date:  2015-07-23       Impact factor: 6.006

10.  High-strength chemical-vapor-deposited graphene and grain boundaries.

Authors:  Gwan-Hyoung Lee; Ryan C Cooper; Sung Joo An; Sunwoo Lee; Arend van der Zande; Nicholas Petrone; Alexandra G Hammerberg; Changgu Lee; Bryan Crawford; Warren Oliver; Jeffrey W Kysar; James Hone
Journal:  Science       Date:  2013-05-31       Impact factor: 47.728

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  4 in total

Review 1.  Multiscale Design of Graphyne-Based Materials for High-Performance Separation Membranes.

Authors:  Jingjie Yeo; Gang Seob Jung; Francisco J Martín-Martínez; Jennifer Beem; Zhao Qin; Markus J Buehler
Journal:  Adv Mater       Date:  2019-01-15       Impact factor: 30.849

Review 2.  Step-by-step design of proteins for small molecule interaction: A review on recent milestones.

Authors:  José M Pereira; Maria Vieira; Sérgio M Santos
Journal:  Protein Sci       Date:  2021-05-10       Impact factor: 6.993

3.  Using simulation to accelerate autonomous experimentation: A case study using mechanics.

Authors:  Aldair E Gongora; Kelsey L Snapp; Emily Whiting; Patrick Riley; Kristofer G Reyes; Elise F Morgan; Keith A Brown
Journal:  iScience       Date:  2021-03-02

4.  A Bayesian experimental autonomous researcher for mechanical design.

Authors:  Aldair E Gongora; Bowen Xu; Wyatt Perry; Chika Okoye; Patrick Riley; Kristofer G Reyes; Elise F Morgan; Keith A Brown
Journal:  Sci Adv       Date:  2020-04-10       Impact factor: 14.136

  4 in total

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