| Literature DB >> 31861333 |
Yeray A Rodríguez Núñez1, Margarita Gutíerrez2, Jans Alzate-Morales3, Francisco Adasme-Carreño3, Fausto M Güiza4, Cristian C Bernal4, Arnold R Romero Bohórquez4.
Abstract
A series of 44 hybrid compounds that included in their structure tetrahydroquinoline (THQ) and isoxazole/isoxazoline moieties were synthesized through the 1,3-dipolar cycloaddition reaction (1,3-DC) from the corresponding N-allyl/propargyl THQs, previously obtained via cationic Povarov reaction. In vitro cholinergic enzymes inhibition potential of all compounds was tested. Enzyme inhibition assays showed that some hybrids exhibited significant potency to inhibit acetylcholinesterase (AChE) and butyrylcholinesterase (BChE). Especially, the hybrid compound 5n presented the more effective inhibition against AChE (4.24 µM) with an acceptable selectivity index versus BChE (SI: 5.19), while compound 6aa exhibited the greatest inhibition activity on BChE (3.97 µM) and a significant selectivity index against AChE (SI: 0.04). Kinetic studies were carried out for compounds with greater inhibitory activity of cholinesterases. Structure-activity relationships of the molecular hybrids were analyzed, through computational models using a molecular cross-docking algorithm and Molecular Mechanics/Generalized Born Surface Area (MM/GBSA) binding free energy approach, which indicated a good correlation between the experimental inhibition values and the predicted free binding energy.Entities:
Keywords: Alzheimer’s disease; cholinesterase inhibitors; cross-docking and MM/GBSA free binding energy; hybrid compounds
Mesh:
Substances:
Year: 2019 PMID: 31861333 PMCID: PMC6981637 DOI: 10.3390/ijms21010005
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Hybrid compounds from commercial drugs tested on cholinergic enzymes.
Scheme 1Synthesis of new THQ–isoxazoline (5a-p) and THQ–isoxazole (6a-ab) hybrid compounds.
Inhibitory activity of THQ–isoxazoline hybrids 5 on AChE and BChE.
| Comp. 5 | R1 | R2 | R3 | R4 | IC50 AChE (µM)a | IC50 BChE (µM)a | SIb |
|---|---|---|---|---|---|---|---|
| a | H | H | H | H | 77.37 ± 0.01 | 81.90 ± 0.04 | 1.06 |
| b | H | H | OCH3 | H | 95.14 ± 0.08 | 65.59 ± 0.006 | 0.69 |
| c | H | OCH3 | OCH3 | H | 100.65 ± 0.05 | N.D | - |
| d | H | OCH3 | OCH3 | OCH3 | 49.82 ± 0.03 | 13.66 ± 0.01 | 0.27 |
| e | CH3 | H | H | H | 189.10 ± 0.01 | 31.40 ± 0.01 | 0.17 |
| f | CH3 | H | OCH3 | H | 16.31 ± 0.01 | 23.36 ± 0.005 | 1.43 |
| g | CH3 | OCH3 | OCH3 | H | 99.71 ± 0.01 | 31.49 ± 0.005 | 0.32 |
| h | CH3 | OCH3 | OCH3 | OCH3 | 37.41 ± 0.03 | 63.72 ± 0.001 | 1.70 |
| i | OCH3 | H | H | H | 82.04 ± 0.11 | 146.37 ± 0.03 | 1.79 |
| j | OCH3 | H | OCH3 | H | 93.66 ± 0.006 | 144.71 ± 0.004 | 1.55 |
| k | OCH3 | OCH3 | OCH3 | H | 15.26 ± 0.02 | 255.82 ± 0.01 | 16.8 |
| l | OCH3 | OCH3 | OCH3 | OCH3 | 109.26 ± 0.01 | 43.67 ± 0.02 | 0.40 |
| m | Cl | H | H | H | 30.10 ± 0.01 | 19.09 ± 0.01 | 0.63 |
| n | Cl | H | OCH3 | H | 4.24 ± 0.02 | 22.00 ± 0.02 | 5.19 |
| o | Cl | OCH3 | OCH3 | H | 13.17 ±0.02 | 83.65 ± 0.01 | 6.35 |
| p | Cl | OCH3 | OCH3 | OCH3 | 12.28 ± 0.01 | 105.78 ± 002 | 8.61 |
| Galantamine | 0.57 ± 0.10 | 8.80 ± 0.5 | 16.29 |
a Values are the average from three independent experiments. b Selectivity index (SI) for AChE is defined as IC50 (BChE)/IC50 (AChE).
Inhibitory activity of THQ–isoxazole hybrids 6 on AChE and BChE.
| Comp. 6 | R1 | R2 | R3 | R4 | R5 | AChE (µM)a | BChE (µM)a | SIb |
|---|---|---|---|---|---|---|---|---|
| a | H | H | H | H | H | 104.74 ± 0.01 | 4.36 ± 0.03 | 0.04 |
| b | H | H | OCH3 | H | H | 42.44 ± 0.01 | 27.25 ± 0.003 | 0.64 |
| c | H | OCH3 | OCH3 | OCH3 | H | 22.07 ± 0.01 | 47.96 ± 0.01 | 2.17 |
| d | CH3 | H | H | H | H | 37.84 ± 0.01 | 18.51 ± 0.01 | 0.49 |
| e | CH3 | H | OCH3 | H | H | 30.43 ± 0.02 | 79.81 ± 0.06 | 2.62 |
| f | CH3 | OCH3 | OCH3 | H | Cl | 54.71 ± 0.02 | 370.12 ± 0.03 | 6.76 |
| g | CH3 | OCH3 | OCH3 | OCH3 | H | 72.94 ± 0.02 | 78.16 ± 0.01 | 1.07 |
| h | OCH3 | H | H | H | H | 52.76 ± 0.01 | 4.33 ± 0.004 | 0.08 |
| i | OCH3 | H | OCH3 | H | H | 84.51 ± 0.01 | 213.22 ± 0.01 | 2.52 |
| j | OCH3 | OCH3 | OCH3 | H | Cl | 54.69 ± 0.01 | 149.00 ± 0.02 | 2.72 |
| k | OCH3 | OCH3 | OCH3 | OCH3 | H | 20.19 ± 0.02 | 73.26 ± 0.01 | 3.63 |
| l | Cl | H | H | H | H | 92.01 ± 0.05 | 14.11 ± 0.02 | 0.15 |
| m | Cl | H | OCH3 | H | H | 13.27 ± 0.01 | 18.42 ± 0.01 | 1.39 |
| n | Cl | OCH3 | OCH3 | H | H | 8.98 ± 0.01 | 24.67 ± 0.01 | 2.75 |
| o | Cl | OCH3 | OCH3 | H | Cl | 80.89 ± 0.04 | 313.82 ± 0.01 | 3.88 |
| p | Cl | OCH3 | OCH3 | OCH3 | H | 41.95 ± 0.11 | 46.84 ± 0.01 | 1.11 |
| q | CH2CH3 | H | H | H | H | 75.95 ± 0.04 | 108.28 ± 0.01 | 1.43 |
| r | CH2CH3 | H | OCH3 | H | H | 18.83 ± 0.003 | 7.18 ± 0.004 | 0.38 |
| s | CH2CH3 | OCH3 | OCH3 | H | Cl | 26.82 ±0.002 | 22.28 ± 0.004 | 0.83 |
| t | CH2CH3 | OCH3 | OCH3 | OCH3 | H | 66.77 ± 0.01 | N.D | - |
| u | F | H | H | H | H | 116.63 ± 0.01 | 17.74 ± 0.01 | 0.15 |
| v | F | H | OCH3 | H | H | 42.48 ± 0.004 | 83.75 ± 0.01 | 1.97 |
| w | F | OCH3 | OCH3 | H | H | 16.83 ± 0.002 | 46.92 ± 0.01 | 2.79 |
| x | F | OCH3 | OCH3 | OCH3 | H | 24.83 ± 0.003 | 163.12 ± 0.01 | 6.57 |
| y | Br | H | H | H | H | 97.84 ± 0.01 | 84.91 ± 0.01 | 0.87 |
| z | Br | H | OCH3 | H | H | 12.19 ± 0.005 | 5.81 ± 0.003 | 0.48 |
| aa | Br | OCH3 | OCH3 | H | H | 96.1 ± 0.01 | 3.97 ± 0.005 | 0.04 |
| ab | Br | OCH3 | OCH3 | OCH3 | H | 148.31 ± 0.004 | 54.09 ± 0.01 | 0.36 |
| Galantamine | 0.57 ± 0.10 | 8.80 ± 0.5 | 16.29 |
a Values are the average from three independent experiments. b Selectivity index (SI) for AChE is defined as IC50 (BChE)/IC50 (AChE).
Figure 2The Lineweaver–Burk plot of AChE/BChE (0.02 U) with acetylthiocholine/butyrylthiocholine substrate in the absence and presence of inhibitor 5n (a) and 6aa (b), respectively.
Figure 3Predicted binding modes for studied compounds within the AChE active site. The most populated pose cluster is shown in (a), and the identified intermolecular interactions are depicted in (b). Compounds are shown in ball-and-stick representation with cyan carbons. Relevant amino acids are shown in tubes in the following coloring code: catalytic triad in yellow, anionic site in magenta, acyl pocket in green, and peripheral anionic site in orange. Secondary protein structure is depicted as white ribbons. (c). Predicted binding mode for galantamine (shown with carbons in plum) within AChE active site.
Figure 4Scatter plot of the experimental activities (IC50) converted to free binding energies (ΔGexpt) vs. predicted free binding energies (ΔGpred). Solid line is shown for the linear regression fit (R2 = 0.83).
Specific protein–ligand interactions, and their occurrence (%) and averaged distances, obtained from molecular docking experiments.
| Interaction Type | Residues | N | Distance (Å) |
|---|---|---|---|
| H-bond | Trp279 | 11 (28%) | 3.17 ± 0.28 |
| Phe330 † | 8 (20%) | 2.68 ± 0.13 | |
| Phe330 ‡ | 13 (33%) | 1.99 ± 0.30 | |
| π-stacking | Trp84 | 24 (60%) | 4.10 ± 0.18 |
| Trp279 | 7 (18%) | 4.92 ± 0.45 | |
| Phe330 | 40 (100%) | 3.56 ± 0.38 | |
| Tyr334 | 24 (60%) | 4.55 ± 0.62 |
H-bond distances were measured between the acceptor and hydrogen atoms, whereas π-stacking interaction distances were measured between the centers of mass of the aromatic rings. † Aromatic H-bond between the carbonyl oxygen of the ligands and one of the aromatic hydrogens of Phe330. ‡ Aromatic H-bond between the oxygen of the isoxazole moiety of the ligands and one of the aromatic hydrogens of Phe330.
Main descriptors calculated for the most active THQ–isoxazole/isoxazoline hybrid compounds.
| Comp. | M.W. | log | Mol. | Acceptor | Donor | PSAe | log Sf | Oral Abs.g | 5 Ruleh |
|---|---|---|---|---|---|---|---|---|---|
| 5n | 439.941 | 3.661 | 1.312.201 | 7.450 | 0.000 | 61.604 | −4.601 | 3 | 0 |
| 6h | 403.480 | 3.798 | 1.272.946 | 6.250 | 0.000 | 61.931 | −4.608 | 3 | 0 |
| 6z | 482.376 | 4.399 | 1.328.457 | 6.250 | 0.000 | 61.908 | −5.547 | 3 | 0 |
| 6aa | 512.402 | 4.528 | 1.411.174 | 7.000 | 0.000 | 66.358 | −5.805 | 3 | 1 |
| Galantamine | 287.358 | 2.020 | 903.565 | 5.200 | 1.000 | 44.892 | −2.163 | 3 | 0 |
a log p for octanol/water (−2.0–−6.5); b Total solvent accessible volume in cubic angstroms using a probe with a radius of 1.4 Å. c Estimated number of H-bonds that would be donated by the solute to water molecules in an aqueous solution; d Estimated number of H-bonds that would be accepted by solute from water molecules in an aqueous solution; e Van der Waals surface areas of polar nitrogen and oxygen atoms; f Predicted aqueous solubility, log S, S in mol dm−3(−6.5–0.5); g Qualitative human oral absorption predicted: 1, 2 or 3 for low, medium or high; h Violations number of Lipinski’s rule of 5.