Literature DB >> 31857121

Core genome multi-locus sequence typing as an essential tool in a high-cost livestock-associated meticillin-resistant Staphylococcus aureus CC398 hospital outbreak.

M L Slott Jensen1, M Nielsine Skov2, H Pries Kristiansen2, A Toft2, H Lundgaard2, H Gumpert3, H Westh3, A Holm2, H J Kolmos2, M Kemp2.   

Abstract

BACKGROUND: Livestock-associated meticillin-resistant Staphylococcus aureus (LA-MRSA) clonal complex (CC) 398 may be transmitted and cause morbidity and mortality in hospitals. The economic cost of stopping hospital transmission of LA-MRSA CC398 is poorly described. Early detection of transmission may limit the extent of the intervention. AIM: To evaluate core genome multi-locus sequence typing (cgMLST) for detecting transmission chains and to estimate the costs for interventions to prevent further spread after discovery of hospital transmission of LA-MRSA CC398.
METHODS: Five patients were involved in two episodes of transmission of LA-MRSA CC398 in a hospital. Standard interventions including MRSA screening of patients and healthcare workers were initiated. Whole genome sequences of the five isolates and 17 epidemiologically unrelated MRSA CC398 isolates from other hospitalized patients were analysed by single nucleotide polymorphism (SNP) comparisons and cgMLST. The economic costs of constraining transmission were calculated from relevant sources.
FINDINGS: The five isolates suspected to be involved in hospital transmission clustered with ≤2 SNPs in the draft genome sequences with some distance to other isolates. cgMLST allocated the five isolates to the same type, which was different from all but two of the sporadic isolates. Furthermore, cgMLST separated the five transmission isolates from all other isolates. The economic costs of the outbreak interventions exceeded €11,000 per patient.
CONCLUSION: LA-MRSA CC398 is transmittable in hospitals, and intervention against transmission may reach considerable costs. cgMLST is useful in surveillance of hospital transmission of LA-MRSA.
Copyright © 2019 The Healthcare Infection Society. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Economic costs; Hospital outbreak; Livestock-associated MRSA; MRSA CC398; Whole genome sequencing; cgMLST

Year:  2019        PMID: 31857121     DOI: 10.1016/j.jhin.2019.12.009

Source DB:  PubMed          Journal:  J Hosp Infect        ISSN: 0195-6701            Impact factor:   3.926


  4 in total

1.  Free online genome analyses reveal multiple strains in the beginning of a hospital outbreak of Enterobacter hormaechei carrying bla OXA-436 carbapenemase gene.

Authors:  Michael Kemp; Magnus G Jespersen; Annette Toft; Anette Holm
Journal:  J Infect Prev       Date:  2022-06-14

2.  Rapid Open-Source SNP-Based Clustering Offers an Alternative to Core Genome MLST for Outbreak Tracing in a Hospital Setting.

Authors:  Judit Szarvas; Mette Damkjaer Bartels; Henrik Westh; Ole Lund
Journal:  Front Microbiol       Date:  2021-04-01       Impact factor: 5.640

Review 3.  Next Generation and Other Sequencing Technologies in Diagnostic Microbiology and Infectious Diseases.

Authors:  Evann E Hilt; Patricia Ferrieri
Journal:  Genes (Basel)       Date:  2022-08-31       Impact factor: 4.141

Review 4.  NGSocomial Infections: High-Resolution Views of Hospital-Acquired Infections Through Genomic Epidemiology.

Authors:  Alexander L Greninger; Danielle M Zerr
Journal:  J Pediatric Infect Dis Soc       Date:  2021-12-24       Impact factor: 3.164

  4 in total

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