Literature DB >> 31853838

Advancing neuro-oncology of glial tumors from big data and multidisciplinary studies.

Chin-Hsing Annie Lin1,2, Mitchel S Berger3.   

Abstract

INTRODUCTION: Multidisciplinary studies for glial tumors has produced an enormous amount of information including imaging, histology, and a large cohort of molecular data (i.e. genomics, epigenomics, metabolomics, proteomics, etc.). The big data resources are made possible through open access that offers great potential for new biomarker or therapeutic intervention via deep-learning and/or machine learning for integrated multi-omics analysis. An equally important effort to define the hallmarks of glial tumors will also advance precision neuro-oncology and inform patient-specific therapeutics. This review summarizes past studies regarding tumor classification, hallmarks of cancer, and hypothetical mechanisms. Leveraging on advanced big data approaches and ongoing cross-disciplinary endeavors, this review also discusses how to integrate multiple layers of big data toward the goal of precision medicine.
RESULTS: In addition to basic research of cancer biology, the results from integrated multi-omics analysis will highlight biological processes and potential candidates as biomarkers or therapeutic targets. Ultimately, these collective resources built upon an armamentarium of accessible data can re-form clinical and molecular data to stratify patient-tailored therapy.
CONCLUSION: We envision that a comprehensive understanding of the link between molecular signatures, tumor locations, and patients' history will identify a molecular taxonomy of glial tumors to advance the improvements in early diagnosis, prevention, and treatment.

Entities:  

Keywords:  Big data integrated analysis; Deep learning; Machine learning; Multi-omics

Mesh:

Substances:

Year:  2019        PMID: 31853838     DOI: 10.1007/s11060-019-03369-8

Source DB:  PubMed          Journal:  J Neurooncol        ISSN: 0167-594X            Impact factor:   4.130


  57 in total

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Authors:  Megan A Clarke; Corinne E Joshu
Journal:  Epidemiol Rev       Date:  2017-01-01       Impact factor: 6.222

2.  Genomics: ENCODE leads the way on big data.

Authors:  Mark Gerstein
Journal:  Nature       Date:  2012-09-13       Impact factor: 49.962

3.  Printed droplet microfluidics for on demand dispensing of picoliter droplets and cells.

Authors:  Russell H Cole; Shi-Yang Tang; Christian A Siltanen; Payam Shahi; Jesse Q Zhang; Sean Poust; Zev J Gartner; Adam R Abate
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-31       Impact factor: 11.205

Review 4.  The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary.

Authors:  David N Louis; Arie Perry; Guido Reifenberger; Andreas von Deimling; Dominique Figarella-Branger; Webster K Cavenee; Hiroko Ohgaki; Otmar D Wiestler; Paul Kleihues; David W Ellison
Journal:  Acta Neuropathol       Date:  2016-05-09       Impact factor: 17.088

5.  Induction of lymphoidlike stroma and immune escape by tumors that express the chemokine CCL21.

Authors:  Jacqueline D Shields; Iraklis C Kourtis; Alice A Tomei; Joanna M Roberts; Melody A Swartz
Journal:  Science       Date:  2010-03-25       Impact factor: 47.728

Review 6.  Tumors: wounds that do not heal. Similarities between tumor stroma generation and wound healing.

Authors:  H F Dvorak
Journal:  N Engl J Med       Date:  1986-12-25       Impact factor: 91.245

Review 7.  The Association Between Adverse Childhood Experiences and Risk of Cancer in Adulthood: A Systematic Review of the Literature.

Authors:  Dawn M Holman; Katie A Ports; Natasha D Buchanan; Nikki A Hawkins; Melissa T Merrick; Marilyn Metzler; Katrina F Trivers
Journal:  Pediatrics       Date:  2016-11       Impact factor: 7.124

8.  Labeling Cancer Risk Factors as Lifestyle Limits Prevention Activities Across the Life Span.

Authors:  Mary C White; Lucy A Peipins; Dawn M Holman
Journal:  Pediatrics       Date:  2016-11       Impact factor: 7.124

Review 9.  Epidemiology of primary brain tumors: current concepts and review of the literature.

Authors:  Margaret Wrensch; Yuriko Minn; Terri Chew; Melissa Bondy; Mitchel S Berger
Journal:  Neuro Oncol       Date:  2002-10       Impact factor: 12.300

Review 10.  A Review on a Deep Learning Perspective in Brain Cancer Classification.

Authors:  Gopal S Tandel; Mainak Biswas; Omprakash G Kakde; Ashish Tiwari; Harman S Suri; Monica Turk; John R Laird; Christopher K Asare; Annabel A Ankrah; N N Khanna; B K Madhusudhan; Luca Saba; Jasjit S Suri
Journal:  Cancers (Basel)       Date:  2019-01-18       Impact factor: 6.639

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  2 in total

1.  A topic-based hierarchical publish/subscribe messaging middleware for COVID-19 detection in X-ray image and its metadata.

Authors:  Süleyman Eken
Journal:  Soft comput       Date:  2020-10-19       Impact factor: 3.732

2.  Distributed messaging and light streaming system for combating pandemics: A case study on spatial analysis of COVID-19 Geo-tagged Twitter dataset.

Authors:  Yavuz Melih Özgüven; Süleyman Eken
Journal:  J Ambient Intell Humaniz Comput       Date:  2021-06-10
  2 in total

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