Literature DB >> 31845298

Overlapping genetic architecture between Parkinson disease and melanoma.

Umber Dube1,2,3,4, Laura Ibanez2,4, John P Budde2,4, Bruno A Benitez2,4, Albert A Davis3, Oscar Harari2,4, Mark M Iles5, Matthew H Law6, Kevin M Brown7, Carlos Cruchaga8,9,10.   

Abstract

Epidemiologic studies have reported inconsistent results regarding an association between Parkinson disease (PD) and cutaneous melanoma (melanoma). Identifying shared genetic architecture between these diseases can support epidemiologic findings and identify common risk genes and biological pathways. Here, we apply polygenic, linkage disequilibrium-informed methods to the largest available case-control, genome-wide association study summary statistic data for melanoma and PD. We identify positive and significant genetic correlation (correlation: 0.17, 95% CI 0.10-0.24; P = 4.09 × 10-06) between melanoma and PD. We further demonstrate melanoma and PD-inferred gene expression to overlap across tissues (correlation: 0.14, 95% CI 0.06 to 0.22; P = 7.87 × 10-04) and highlight seven genes including PIEZO1, TRAPPC2L, and SOX6 as potential mediators of the genetic correlation between melanoma and PD. These findings demonstrate specific, shared genetic architecture between PD and melanoma that manifests at the level of gene expression.

Entities:  

Keywords:  Genetic correlation; Melanoma; Parkinson disease; Polygenic; Shared genetic architecture; TWAS

Mesh:

Year:  2019        PMID: 31845298      PMCID: PMC7379325          DOI: 10.1007/s00401-019-02110-z

Source DB:  PubMed          Journal:  Acta Neuropathol        ISSN: 0001-6322            Impact factor:   17.088


  88 in total

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2.  Integrative approaches for large-scale transcriptome-wide association studies.

Authors:  Alexander Gusev; Arthur Ko; Huwenbo Shi; Gaurav Bhatia; Wonil Chung; Brenda W J H Penninx; Rick Jansen; Eco J C de Geus; Dorret I Boomsma; Fred A Wright; Patrick F Sullivan; Elina Nikkola; Marcus Alvarez; Mete Civelek; Aldons J Lusis; Terho Lehtimäki; Emma Raitoharju; Mika Kähönen; Ilkka Seppälä; Olli T Raitakari; Johanna Kuusisto; Markku Laakso; Alkes L Price; Päivi Pajukanta; Bogdan Pasaniuc
Journal:  Nat Genet       Date:  2016-02-08       Impact factor: 38.330

3.  A novel membrane protein, encoded by the gene covering KIAA0233, is transcriptionally induced in senile plaque-associated astrocytes.

Authors:  Kazuki Satoh; Mitsumi Hata; Seiji Takahara; Hidetoshi Tsuzaki; Hiroshi Yokota; Hiroyasu Akatsu; Takayuki Yamamoto; Kenji Kosaka; Tatsuo Yamada
Journal:  Brain Res       Date:  2006-07-18       Impact factor: 3.252

Review 4.  Refining frontotemporal dementia with parkinsonism linked to chromosome 17: introducing FTDP-17 (MAPT) and FTDP-17 (PGRN).

Authors:  Bradley F Boeve; Mike Hutton
Journal:  Arch Neurol       Date:  2008-04

5.  Risk of cutaneous melanoma associated with pigmentation characteristics and freckling: systematic overview of 10 case-control studies. The International Melanoma Analysis Group (IMAGE).

Authors:  J M Bliss; D Ford; A J Swerdlow; B K Armstrong; M Cristofolini; J M Elwood; A Green; E A Holly; T Mack; R M MacKie
Journal:  Int J Cancer       Date:  1995-08-09       Impact factor: 7.396

6.  Genetic comorbidities in Parkinson's disease.

Authors:  Mike A Nalls; Mohamad Saad; Alastair J Noyce; Margaux F Keller; Anette Schrag; Jonathan P Bestwick; Bryan J Traynor; J Raphael Gibbs; Dena G Hernandez; Mark R Cookson; Huw R Morris; Nigel Williams; Thomas Gasser; Peter Heutink; Nick Wood; John Hardy; Maria Martinez; Andrew B Singleton
Journal:  Hum Mol Genet       Date:  2013-09-20       Impact factor: 6.150

7.  A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.

Authors:  Diana Chang; Mike A Nalls; Ingileif B Hallgrímsdóttir; Julie Hunkapiller; Marcel van der Brug; Fang Cai; Geoffrey A Kerchner; Gai Ayalon; Baris Bingol; Morgan Sheng; David Hinds; Timothy W Behrens; Andrew B Singleton; Tushar R Bhangale; Robert R Graham
Journal:  Nat Genet       Date:  2017-09-11       Impact factor: 38.330

8.  A genomic pathway approach to a complex disease: axon guidance and Parkinson disease.

Authors:  Timothy G Lesnick; Spiridon Papapetropoulos; Deborah C Mash; Jarlath Ffrench-Mullen; Lina Shehadeh; Mariza de Andrade; John R Henley; Walter A Rocca; J Eric Ahlskog; Demetrius M Maraganore
Journal:  PLoS Genet       Date:  2007-06       Impact factor: 5.917

9.  Cell-type-specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes.

Authors:  Tongwu Zhang; Jiyeon Choi; William J Pavan; Kevin M Brown; Michael A Kovacs; Jianxin Shi; Mai Xu; Alisa M Goldstein; Adam J Trower; D Timothy Bishop; Mark M Iles; David L Duffy; Stuart MacGregor; Laufey T Amundadottir; Matthew H Law; Stacie K Loftus
Journal:  Genome Res       Date:  2018-10-17       Impact factor: 9.043

10.  Frontotemporal dementia and its subtypes: a genome-wide association study.

Authors:  Raffaele Ferrari; Dena G Hernandez; Michael A Nalls; Jonathan D Rohrer; Adaikalavan Ramasamy; John B J Kwok; Carol Dobson-Stone; William S Brooks; Peter R Schofield; Glenda M Halliday; John R Hodges; Olivier Piguet; Lauren Bartley; Elizabeth Thompson; Eric Haan; Isabel Hernández; Agustín Ruiz; Mercè Boada; Barbara Borroni; Alessandro Padovani; Carlos Cruchaga; Nigel J Cairns; Luisa Benussi; Giuliano Binetti; Roberta Ghidoni; Gianluigi Forloni; Daniela Galimberti; Chiara Fenoglio; Maria Serpente; Elio Scarpini; Jordi Clarimón; Alberto Lleó; Rafael Blesa; Maria Landqvist Waldö; Karin Nilsson; Christer Nilsson; Ian R A Mackenzie; Ging-Yuek R Hsiung; David M A Mann; Jordan Grafman; Christopher M Morris; Johannes Attems; Timothy D Griffiths; Ian G McKeith; Alan J Thomas; P Pietrini; Edward D Huey; Eric M Wassermann; Atik Baborie; Evelyn Jaros; Michael C Tierney; Pau Pastor; Cristina Razquin; Sara Ortega-Cubero; Elena Alonso; Robert Perneczky; Janine Diehl-Schmid; Panagiotis Alexopoulos; Alexander Kurz; Innocenzo Rainero; Elisa Rubino; Lorenzo Pinessi; Ekaterina Rogaeva; Peter St George-Hyslop; Giacomina Rossi; Fabrizio Tagliavini; Giorgio Giaccone; James B Rowe; Johannes C M Schlachetzki; James Uphill; John Collinge; Simon Mead; Adrian Danek; Vivianna M Van Deerlin; Murray Grossman; John Q Trojanowski; Julie van der Zee; William Deschamps; Tim Van Langenhove; Marc Cruts; Christine Van Broeckhoven; Stefano F Cappa; Isabelle Le Ber; Didier Hannequin; Véronique Golfier; Martine Vercelletto; Alexis Brice; Benedetta Nacmias; Sandro Sorbi; Silvia Bagnoli; Irene Piaceri; Jørgen E Nielsen; Lena E Hjermind; Matthias Riemenschneider; Manuel Mayhaus; Bernd Ibach; Gilles Gasparoni; Sabrina Pichler; Wei Gu; Martin N Rossor; Nick C Fox; Jason D Warren; Maria Grazia Spillantini; Huw R Morris; Patrizia Rizzu; Peter Heutink; Julie S Snowden; Sara Rollinson; Anna Richardson; Alexander Gerhard; Amalia C Bruni; Raffaele Maletta; Francesca Frangipane; Chiara Cupidi; Livia Bernardi; Maria Anfossi; Maura Gallo; Maria Elena Conidi; Nicoletta Smirne; Rosa Rademakers; Matt Baker; Dennis W Dickson; Neill R Graff-Radford; Ronald C Petersen; David Knopman; Keith A Josephs; Bradley F Boeve; Joseph E Parisi; William W Seeley; Bruce L Miller; Anna M Karydas; Howard Rosen; John C van Swieten; Elise G P Dopper; Harro Seelaar; Yolande A L Pijnenburg; Philip Scheltens; Giancarlo Logroscino; Rosa Capozzo; Valeria Novelli; Annibale A Puca; Massimo Franceschi; Alfredo Postiglione; Graziella Milan; Paolo Sorrentino; Mark Kristiansen; Huei-Hsin Chiang; Caroline Graff; Florence Pasquier; Adeline Rollin; Vincent Deramecourt; Florence Lebert; Dimitrios Kapogiannis; Luigi Ferrucci; Stuart Pickering-Brown; Andrew B Singleton; John Hardy; Parastoo Momeni
Journal:  Lancet Neurol       Date:  2014-07       Impact factor: 44.182

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Review 2.  Linking Parkinson's Disease and Melanoma: Interplay Between α-Synuclein and Pmel17 Amyloid Formation.

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Review 4.  Neuroendocrine Factors in Melanoma Pathogenesis.

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Review 5.  Midbrain Dopaminergic Neuron Development at the Single Cell Level: In vivo and in Stem Cells.

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6.  Parkinson's disease and cancer: a systematic review and meta-analysis of over 17 million participants.

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