| Literature DB >> 31844727 |
Eman Ae Badr1, Ibrahim El Tantawy El Sayed2, Mohamed Fa Assar3, Sahar Am Ali4, Nehal S Ibrahim3.
Abstract
BACKGROUND: Livin gene and Yes-Associated Protein 1 (YAP1 (play a pivotal role in organ size control and tumorigenesis. AIM: In the present pilot study, we investigate the expression of Livin gene and YAP1 in hepatitis C virus (HCV) associated hepatocellular carcinoma (HCC) compared to other HCV patients and controls.Entities:
Keywords: Cancer research; HCC and HCV; Livin; Oncology; YAP1
Year: 2019 PMID: 31844727 PMCID: PMC6895689 DOI: 10.1016/j.heliyon.2019.e02798
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
Primers used for detection of YAP1 gene and Livin gene.
| gene | Primer | Accession number |
|---|---|---|
| Forward TAGCCCTGCGTAGCCAGTTA | NM_001130145.3 | |
| Forward TGAGGAGTTGCGTCTGG | NM_139317.3 | |
| Forward TGCACCACCAACTGCTTAGC | NM_002046.7 |
Fig. 1(a): Amplification plot and melting curve of Livin gene expression. (b): Amplification plot and melting curve of YAP1 gene expression.
Comparison between the different studied groups according to demographics data and risk factors.
| HCC (n = 30) | HCV no treatment (n = 30) | HCV with treatment (n = 30) | Control (n = 30) | Test of Sig. | p | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| No. | % | No. | % | No. | % | No. | % | |||
| Male | 26 | 86.7 | 20 | 66.7 | 24 | 80.0 | 18 | 60.0 | χ2 = 6.818 | 0.078 |
| Female | 4 | 13.3 | 10 | 33.3 | 6 | 20.0 | 12 | 40.0 | ||
| Min. – Max. | 35.0–65.0 | 19.0–70.0 | 38.0–68.0 | 30.0–68.0 | F = 2.459 | 0.066 | ||||
| Mean ± SD. | 51.03 ± 7.64 | 49.77 ± 16.34 | 56.87 ± 7.83 | 49.47 ± 14.0 | ||||||
| Median | 53.0 | 55.0 | 56.0 | 45.0 | ||||||
| Smoking | 13 | 43.3 | 12 | 40.0 | 7 | 23.3 | 6 | 20.0 | 5.700 | 0.127 |
| Diabetes | 14 | 46.7 | 7 | 23.3 | 8 | 26.7 | 14 | 46.7 | 6.198 | 0.102 |
| Hypertension | 10 | 33.3 | 5 | 16.7 | 5 | 16.7 | 8 | 26.7 | 3.354 | 0.340 |
χ2: Chi square testF: F for ANOVA testp: p value for comparing between the studied groups.
Comparison between the different studied groups according to RQ.
| HCC (n = 30) | HCV no ttt (n = 30) | HCV w ttt (n = 30) | Control (n = 30) | H | p | |
|---|---|---|---|---|---|---|
| Min. – Max. | 3.54–25.67 | 1.89–8.20 | 0.43–4.25 | 0.43–4.25 | 95.201 | <0.001 |
| Mean ± SD. | 9.52 ± 4.48 | 4.30 ± 1.45 | 0.94 ± 0.72 | 1.04 ± 0.93 | ||
| Median | 8.76 | 4.35 | 0.78 | 0.78 | ||
| <0.001 | <0.001 | 0.873 | ||||
| p2 = 0.002 | ||||||
| Min. – Max. | 4.75–40.68 | 0.04–15.70 | 1.28–10.50 | 0.02–1.10 | 77.131 | <0.001 |
| Mean ± SD. | 14.06 ± 10.84 | 3.98 ± 3.85 | 5.16 ± 2.44 | 0.51 ± 0.29 | ||
| Median | 9.42 | 4.64 | 4.70 | 0.55 | ||
| <0.001 | <0.001 | <0.001 | ||||
| p2 < 0.001 | ||||||
H: H for Kruskal Wallis test, Pairwise comparison bet. each 2 groups was done using Post Hoc Test (Dunn's for multiple comparisons test).
p: p value for comparing between the studied groups.
p1: p value for comparing between control and each other groups.
p2: p value for comparing between HCC group and HCV no ttt group.
p3: p value for comparing between HCC group and HCV w ttt group.
p4: p value for comparing between HCV no treatment group and HCV with treatment.
Statistically significant at p ≤ 0.05.
Fig. 2Comparison between the different studied groups according to RQ of Livin and YAP1 genes.
Correlation between RQ of Livin gene expression and laboratory investigation & RQ of YAP1 gene expression in each group.
| RQ of | ||||||||
|---|---|---|---|---|---|---|---|---|
| HCC | HCV no ttt | HCV w ttt | Control | |||||
| rs | p | rs | p | rs | p | rs | p | |
| TLC (x103/ul) | -0.259 | 0.168 | 0.118 | 0.535 | 0.123 | 0.516 | 0.052 | 0.784 |
| Platelets (x103/ul) | -0.003 | 0.986 | -0.140 | 0.459 | -0.019 | 0.921 | -0.037 | 0.848 |
| Prothrombin time percent | -0.146 | 0.443 | 0.148 | 0.435 | 0.126 | 0.508 | 0.069 | 0.718 |
| INR | 0.085 | 0.653 | -0.482 | 0.007 | -0.281 | 0.133 | -0.026 | 0.891 |
| ALT (IU/L) | 0.217 | 0.248 | -0.345 | 0.062 | 0.011 | 0.954 | 0.212 | 0.260 |
| AST (IU/L) | 0.059 | 0.757 | -0.195 | 0.302 | -0.215 | 0.253 | 0.073 | 0.701 |
| ALP (IU/L) | 0.138 | 0.468 | -0.067 | 0.724 | -0.131 | 0.491 | -0.060 | 0.755 |
| GGT (IU/L) | -0.366 | 0.046 | -0.103 | 0.589 | -0.090 | 0.636 | -0.110 | 0.563 |
| AFP (ng/ml) | 0.358 | 0.052 | 0.163 | 0.391 | 0.449 | 0.013 | -0.211 | 0.264 |
| CEA (mg/dl) | 0.392 | 0.032 | -0.281 | 0.133 | -0.357 | 0.053 | 0.093 | 0.625 |
| Albumin (gm/dl) | 0.451 | 0.012 | 0.287 | 0.124 | -0.226 | 0.231 | 0.073 | 0.701 |
| Total bilirubin (mg/dl) | -0.119 | 0.531 | -0.115 | 0.544 | 0.063 | 0.740 | 0.184 | 0.330 |
| Direct bilirubin (mg/dl) | 0.170 | 0.370 | -0.273 | 0.145 | 0.161 | 0.395 | -0.095 | 0.618 |
| BUN (mg/dl) | -0.053 | 0.779 | -0.503 | 0.005 | 0.305 | 0.101 | -0.011 | 0.955 |
| Creatinine (mg/dl) | -0.320 | 0.084 | -0.438 | 0.016 | 0.021 | 0.913 | 0.222 | 0.237 |
| RQ of | 0.680 | 0.001 | 0.0246 | 0.897 | 0.1415 | 0.4557 | 0.196 | 0.299 |
rs: Spearman coefficient.
Statistically significant at p ≤ 0.05.
Correlation between RQ of YAP1 gene and laboratory investigation in each group.
| RQ of | ||||||||
|---|---|---|---|---|---|---|---|---|
| HCC | HCV no ttt | HCV w ttt | Control | |||||
| rs | p | rs | p | rs | p | rs | p | |
| TLC (x103/ul) | -0.137 | 0.471 | -0.024 | 0.898 | 0.135 | 0.478 | -0.359 | 0.051 |
| Platelets (x103/ul) | 0.130 | 0.493 | -0.528 | 0.003 | 0.302 | 0.105 | -0.269 | 0.151 |
| Prothrombin time percent | 0.035 | 0.856 | 0.561 | 0.001 | -0.184 | 0.331 | -0.134 | 0.480 |
| INR | 0.012 | 0.949 | -0.350 | 0.058 | 0.202 | 0.286 | 0.045 | 0.813 |
| ALT (IU/L) | 0.341 | 0.065 | -0.069 | 0.716 | -0.028 | 0.883 | -0.004 | 0.984 |
| AST (IU/L) | 0.244 | 0.194 | -0.085 | 0.656 | 0.030 | 0.877 | -0.263 | 0.160 |
| ALP (IU/L) | 0.380 | 0.038 | 0.017 | 0.930 | 0.142 | 0.453 | -0.348 | 0.060 |
| GGT (IU/L) | -0.331 | 0.074 | 0.066 | 0.728 | -0.248 | 0.186 | 0.190 | 0.314 |
| AFP (ng/ml) | 0.308 | 0.097 | 0.290 | 0.120 | -0.182 | 0.335 | -0.026 | 0.892 |
| CEA (mg/dl) | 0.711 | <0.001 | -0.606 | <0.001 | 0.329 | 0.076 | 0.133 | 0.483 |
| Albumin (gm/dl) | 0.402 | 0.028 | -0.120 | 0.529 | -0.030 | 0.877 | -0.263 | 0.160 |
| Total bilirubin (mg/dl) | -0.171 | 0.367 | 0.199 | 0.291 | 0.195 | 0.302 | -0.202 | 0.284 |
| Direct bilirubin (mg/dl) | 0.059 | 0.758 | -0.031 | 0.870 | 0.100 | 0.598 | 0.206 | 0.275 |
| BUN (mg/dl) | -0.087 | 0.646 | 0.030 | 0.874 | -0.200 | 0.290 | 0.253 | 0.177 |
| Creatinine (mg/dl) | -0.099 | 0.604 | -0.035 | 0.856 | -0.171 | 0.365 | -0.026 | 0.892 |
rs: Spearman coefficient.
Statistically significant at p ≤ 0.05.
Fig. 3Correlation between RQ of Livin and YAP1 genes and CEA (mg/dl) in HCC group.
Relation between RQ of Livin gene and RQ of YAP1 gene with tumor size by US in HCC group (n = 30).
| Tumor size by US | N | RQ of | H | p | ||
|---|---|---|---|---|---|---|
| Min. – Max. | Mean ± SD. | Median | ||||
| ≤5 | 14 | 3.54–9.93 | 7.13 ± 1.83 | 7.01 | 11.644 | 0.003 |
| >5 | 9 | 5.67–20.80 | 11.37 ± 4.45 | 11.53 | ||
| Multifocal | 7 | 7.56–25.67 | 11.92 ± 6.18 | 10.39 | ||
| Tumor size by US | N | RQ of | H | p | ||
| Min. – Max. | Mean ± SD. | Median | ||||
| ≤5 | 14 | 4.75–11.89 | 6.94 ± 1.96 | 6.45 | 15.622 | <0.001 |
| >5 | 6.25–36.89 | 18.35 ± 11.68 | 13.78 | |||
| Multifocal | 9.89–40.68 | 22.79 ± 11.94 | 24.67 | |||
H: H for Kruskal Wallis test.
p: p value for comparing between the different categories.
Statistically significant at p ≤ 0.05.
Fig. 4Relation between RQ of Livin and YAP1 genes and tumor size in HCC group.
Cox regression of overall survival in HCC group for determination of hazard ratio.
| Univariate | ||||
|---|---|---|---|---|
| p | HR (95%C.I) | p | HR (95%C.I) | |
| Gender (female) | 0.442 | 1.887 (0.400–8.892) | ||
| Age (years) | 0.960 | 0.998 (0.923–1.079) | ||
| Smokin | 0.712 | 0.788 (0.222–2.796) | ||
| Diabetes | 0.616 | 0.724 (0.204–2.564) | ||
| Hypertension | 0.463 | 1.607 (0.453–5.701) | ||
| Hb level (gm/dl) | 0.383 | 1.158 (0.833–1.608) | ||
| TLC (x103/ul) | 0.929 | 0.984 (0.685–1.412) | ||
| Platelets (x103/ul) | 0.687 | 1.002 (0.992–1.012) | ||
| Prothrombin time percent | 0.875 | 1.004 (0.960–1.049) | ||
| INR | 0.951 | 0.908 (0.044–18.963) | ||
| ALT (IU/L) | 0.610 | 1.007 (0.980–1.035) | ||
| AST (IU/L) | 0.845 | 1.003 (0.973–1.033) | ||
| ALP (IU/L) | 0.948 | 1.000 (0.991–1.008) | ||
| Albumin (gm/dl) | 0.113 | 2.133 (0.837–5.437) | ||
| GGT (IU/L) | 0.274 | 0.996 (0.988–1.004) | ||
| AFP (ng/ml) | 0.883 | 1.000 (0.999–1.001) | ||
| CEA (mg/dl) | 0.023 | 1.074 (1.010–1.142) | 0.629 | 0.964 (0.829–1.120) |
| Total bilirubin (mg/dl) | 0.094 | 0.149 (0.016–1.383) | ||
| Direct bilirubin (mg/dl) | 0.218 | 0.067 (0.001–4.954) | ||
| BUN (mg/dl) | 0.969 | 1.002 (0.928–1.081) | ||
| Creatinine (mg/dl) | 0.230 | 0.294 (0.040–2.168) | ||
| PCR x105 | 0.088 | 1.002 (1.000–1.004) | ||
| RQ of | 0.008 | 1.168 (1.402–1.308) | 0.438 | 0.914 (0.728–1.147) |
| RQ of | <0.001 | 1.124 (1.065–1.186) | 0.001 | 1.196 (1.078–1.328) |
OR: Odd's ratio, C.I: Confidence interval.
All variables with p < 0.05 was included in the multivariate.
Statistically significant at p ≤ 0.05.