| Literature DB >> 31844625 |
Kenji Yamada1, Yoshimitsu Osawa1,2, Hironori Kobayashi1, Yuki Hasegawa1, Seiji Fukuda1, Seiji Yamaguchi1, Takeshi Taketani1.
Abstract
INTRODUCTION: Various markers, such as C14:1 and the C14:1/C2 ratio, are used as diagnostic markers of very long-chain acyl-CoA dehydrogenase deficiency (VLCADD). However, the levels of these markers in patients with VLCADD overlap with those in heterozygous carriers and even healthy subjects.Entities:
Keywords: Diagnostic markers; Dodecenoyl carnitine; Heterozygous carrier; Newborn screening; Tetradecenoyl carnitine; Very long-chain acyl-CoA dehydrogenase deficiency
Year: 2019 PMID: 31844625 PMCID: PMC6895747 DOI: 10.1016/j.ymgmr.2019.100535
Source DB: PubMed Journal: Mol Genet Metab Rep ISSN: 2214-4269
Number of patients and samples.
| Total no. of Pt | No. of patients (samples) | ||
|---|---|---|---|
| serum | DBS | ||
| Patients with VLCADD | |||
| Severe form | 3 | 3 (3) | 3 (6) |
| Intermediate form | 8 | 8 (35) | 7 (54) |
| Myopathic form | 7 | 7 (30) | 5 (13) |
| Presymptomatic form | 5 | 4 (20) | 4 (21) |
| Total | 23 | 22 (88) | 19 (94) |
| Heterozygous carriers | |||
| Detected by NBS | 8 | 7 (44) | 8 (47) |
| Parents or siblings of patients | 7 | 3 (3) | 6(6) |
| Total | 15 | 10 (47) | 14 (53) |
| Control | |||
| 185 (185) | 251 (251) | ||
No: number, Pt: patients, VLCADD: very long-chain acyl-CoA dehydrogenase, DBS; dried blood spot, NBS: newborn screening.
Ranges of serum and DBS markers in VLCAD deficiency patients, heterozygous carriers, and controls.
| Serum (μmol/L) | DBS (μmol/L) | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | genotype | s-C0 | s-C14:1 | s-C14:1/C12:1 | s-C14:1/C2 | s-C14:1/C16 | No. of sample | b-C0 | b-C14:1 | b-C14:1/C12:1 | b-C14:1/C2 | b-C14:1/C16 | No. of sample |
| (20–60) | (<0.2) | (<4.0) | (<0.02) | (<2.0) | (20-60) | (<0.3) | (<4.0) | (<0.013) | (<0.1) | ||||
| Severe form | |||||||||||||
| P1a | G152S/A333Cfs | 28.00 | 3.15 | 44.37 | 0.43 | 6.06 | [ | 19.44–28.78 | 1.15–7.52 | 15.91–43.87 | 0.09–0.69 | 0.44–1.26 | [ |
| P2a | G152S/A333Cfs | 33.87 | 5.12 | 52.24 | 0.88 | 1.92 | [ | 2.74–33.53 | 0.70–4.63 | 20.00–38.58 | 0.18–0.93 | 0.40–0.85 | [ |
| P3 | IVS9 + 1G > C/G185S | 144.43 | 10.79 | 20.75 | 0.39 | 2.86 | [ | 69.40 | 4.50 | 15.52 | 0.13 | 1.39 | [ |
| Intermediate form | |||||||||||||
| P4 | IVS7-18TAG del/L172V | 23.85–27.80 | 1.61–5.8 | 9.67–14.64 | 0.06–0.18 | 5.13–6.70 | [ | 15.98–31.83 | 0.55–2.91 | 6.27–17.31 | 0.06–0.42 | 0.66–2.80 | [ |
| P5 | A333Cfs | 42.11-61.29 | 0.14–3.33 | 6.05–13.84 | 0.011–0.21 | 1.64–9.21 | [ | 15.36–35.69 | 0.10–6.97 | 3.11–25.25 | 0.003–0.88 | 0.07–6.51 | [ |
| P6 | F113 | 34.18-95.85 | 1.39-14.00 | 25.09–97.50 | 0.10–0.91 | 2.01–7.95 | [ | 18.86–45.93 | 0.69–5.03 | 12.32–48.59 | 0.10–0.57 | 0.63–3.18 | [ |
| P7 | P89S/A536Yfs | 85.42-163.45 | 2.02-5.83 | 11.22–48.50 | 0.13–0.30 | 2.10–5.21 | [ | NA | NA | NA | NA | NA | (0) |
| P8 | K382Q/G447R | 30.96–51.06 | 1.29–7.06 | 8.94–19.55 | 0.28–0.28 | 3.08–6.45 | [ | 18.38 | 0.74 | 13.45 | 0.22 | 1.57 | [ |
| P9b | L243F/V547M | 44.76 | 0.17 | 5.48 | 0.02 | 2.30 | [ | 21.24–27.85 | 0.12–4.62 | 1.67–9.24 | 0.02–0.21 | 0.16–1.43 | [ |
| P10b | L243F/V547M | 13.85–86.79 | 0.34–7.23 | 9.44–22.59 | 0.02–1.17 | 2.42–11.30 | [ | 7.45–54.49 | 0.15–7.81 | 4.16–28.46 | 0.02–0.70 | 0.16–1.99 | [ |
| P11#1 | G222R/IVS9 + 3G > T | 52.29 | 7.69 | 29.58 | 0.43 | 6.25 | [ | 39.44 | 11.50 | 34.72 | 1.01 | 8.27 | [ |
| Myopathic form | |||||||||||||
| P12 | R229 | 21.48-60.28 | 3.10-12.33 | 36.05–100.59 | 0.20–0.94 | 2.80–7.10 | [ | 15.2–28.77 | 0.96–5.05 | 22.32–42.82 | 0.09–0.68 | 0.93–2.54 | [ |
| P13 | A333fs | 8.21-130.71 | 1.91–15.99 | 25.13–78.80 | 0.24–2.20 | 1.59–5.74 | [ | 5.26–7.91 | 0.86–1.45 | 22.10–25.40 | 0.13–0.23 | 1.06–1.75 | [ |
| P14#2 | G354Hfs | 40.14-63.07 | 0.14–3.88 | 7.00–11.09 | 0.02–0.27 | 1.89–5.62 | [ | 18.48 | 0.39 | 3.97 | 0.05 | 0.35 | [ |
| P15 | L172P/A180T | 5.93–39.29 | 1.28–2.38 | 26.44–63.79 | 0.20–0.43 | 4.10–4.87 | [ | 7.92–13.52 | 1.20–1.73 | 10.56–25.37 | 0.24–0.29 | 1.38–1.84 | [ |
| P16 | K264E/K264E | 46.80 | 2.54 | 9.40 | 0.20 | 7.06 | [ | NA | NA | NA | NA | NA | (0) |
| P17 | K264E/M437V | 84.96–146.20 | 1.26–4.37 | 13.69–20.66 | 0.06–0.22 | 2.06–7.67 | [ | 51.76–60.7 | 1.02–1.63 | 12.83–21.73 | 0.05–0.11 | 0.43–0.76 | [ |
| P18#3 | E285G/V400M | 46.43–84.51 | 0.47–0.51 | 8.25–12.14 | 0.05–0.06 | 1.24–2.04 | [ | NA | NA | NA | NA | NA | (0) |
| Presymptomatic form | |||||||||||||
| P19 | NA | 25.88 | 1.15 | 7.67 | 0.14 | 8.21 | [ | NA | NA | NA | NA | NA | (0) |
| P20 | K264E/n.d. | 35.71–37.63 | 0.25–0.91 | 5.68–6.41 | 0.03–0.11 | 2.08–7.00 | [ | 23.71–28.60 | 0.50–1.80 | 6.44–8.57 | 0.05–0.07 | 1.08–1.45 | [ |
| P21 | C607S/C607S | 45.91–47.65 | 0.25–0.32 | 1.78–5.55 | 0.018–0.03 | 1.39–3.72 | [ | 35.20–41.28 | 0.10–0.13 | 0.97–2.66 | 0.003–0.006 | 0.07–0.13 | [ |
| P22 | F112L/R450H | NA | NA | NA | NA | NA | (0) | 23.08 | 0.30 | 5.56 | 0.016 | 0.65 | [ |
| P23 | T260P/C607S | 30.25–53.97 | 0.40–3.78 | 2.67–10.21 | 0.02–0.37 | 2.00–10.27 | [ | 18.17–30.66 | 0.27–1.12 | 1.65–8.52 | 0.015–0.10 | 0.36–1.15 | [ |
| Heterozygous carrier | |||||||||||||
| H1 | C237R | 25.06–65.39 | 0.05–0.28 | 0.42–3.15 | 0.005–0.018 | 0.24–1.55 | [ | 22.72–36.96 | 0.06–0.18 | 0.59–8.29 | 0.003–0.010 | 0.07–0.22 | [ |
| H2 | G439fs | 30.29-52.44 | 0.04-0.38 | 0.84–2.77 | 0.005–0.026 | 0.43–3.18 | [ | 17.55–39.32 | 0.03–0.15 | 0.60–3.36 | 0.004–0.019 | 0.05–0.29 | [ |
| H3 | G289R | 32.08–55.73 | 0.10–0.39 | 1.09–3.00 | 0.005–0.015 | 0.42–1.64 | [ | 24.09–43.93 | 0.12–0.16 | 0.58–1.71 | 0.003–0.006 | 0.07–0.14 | [ |
| H4 | IVS9 + 1G > C | 51.52–54.41 | 0.10–0.14 | 2.38–3.25 | 0.006–0.008 | 0.64–0.83 | [ | 24.47–39.32 | 0.04–0.17 | 0.57–2.66 | 0.002–0.008 | 0.04–0.15 | [ |
| H5 | D466Y | 33.20–52.66 | 0.11–0.64 | 1.47–5.98 | 0.008–0.029 | 0.30–3.77 | [ | 20.59–51.91 | 0.07–0.38 | 0.93–5.89 | 0.003–0.020 | 0.04–0.29 | [ |
| H6 | W249L | 52.21–65.76 | 0.11–0.35 | 1.08–3.54 | 0.007–0.026 | 1.10–2.92 | [ | 19.29–36.86 | 0.05–0.09 | 0.61–1.31 | 0.003–0.006 | 0.06–0.10 | [ |
| H7 | IVS9 + 1G > C | NA | NA | NA | NA | NA | (0) | 12.18 | 0.23 | 1.07 | 0.009 | 0.08 | [ |
| H8 | K299del | 35.73–58.08 | 0.12–0.69 | 0.90–3.45 | 0.012–0.020 | 1.46–2.68 | [ | 29.36–47.76 | 0.10–0.43 | 0.28–3.91 | 0.001–0.009 | 0.02–0.22 | [ |
| H9#2 | NA | 61.30 | 0.16 | 1.60 | 0.016 | 1.45 | [ | NA | NA | NA | NA | NA | (0) |
| H10 | A333Cfs | NA | NA | NA | NA | NA | (0) | 48.26 | 0.02 | 0.89 | 0.005 | 0.03 | [ |
| H11 | R385W | NA | NA | NA | NA | NA | (0) | 40.77 | 0.03 | n.d. | 0.009 | 0.07 | [ |
| H12#1 | IVS9 + 3G > T | NA | NA | NA | NA | NA | (0) | 50.39 | 0.18 | 1.16 | 0.008 | 0.19 | [ |
| H13#1 | G222R | NA | NA | NA | NA | NA | (0) | 53.62 | 0.26 | 1.98 | 0.009 | 0.17 | [ |
| H14#3 | V400M | 102.37 | 0.12 | 1.00 | 0.009 | 0.67 | [ | 56.74 | 0.08 | 1.00 | 0.003 | 0.06 | [ |
| H15#3 | E285G | 116.91 | 0.11 | 1.45 | 0.014 | 1.14 | [ | 53.31 | 0.10 | 1.43 | 0.006 | 0.13 | [ |
| Control | 12.24–112.40 | 0.00–1.39 | 0.00–6.32 | 0.000–0.031 | 0.00–4.13 | (185) | 8.23–38.30 | 0.02–0.25 | 0.24–5.5 | 0.001–0.010 | 0.01–0.10 | (251) | |
No., number; DBS, dried blood spots; VLCAD, very long-chain acyl-CoA dehydrogenase; a, b, sibling; #1, #2, #3, parent.
Underlined text indicates values lower than the cutoff in VLCAD deficiency patients or higher than the cutoff in heterozygous carriers and controls.
NA, not available; n.d., not detected.
, reference values are used at Shimane University.
Results for the markers in DBS and serum.
| Serum | DBS | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| VLCADD | Hetero-zygous carrier ( | Control ( | VLCADD | Hetero zygous carrier ( | Control ( | |||||||||
| Severe ( | Inter-mediate ( | Myopathic ( | Pre symptomatic ( | Overall ( | Severe (n = 3) | Inter-mediate (n = 7) | Myopathic ( | Pre symptomatic (n = 4) | Overall ( | |||||
| Median | 5.12 | 1.34 | 1.28 | 0.32 | 1.29 | 0.32 | 0.08 | 1.15 | 0.55 | 0.96 | 0.29 | 0.69 | 0.18 | 0.07 |
| Range | 3.15–10.79 | 0.14–7.69 | 0.14–3.1 | 0.25–1.15 | 0.14–10.79 | 0.12–0.69 | 0.00–1.39 | 0.70–4.50 | 0.08–11.5 | 0.39–1.20 | 0.1–0.5 | 0.08–11.50 | 0.02–0.43 | 0.00–0.25 |
| Mean | 6.35 | 1.83 | 1.53 | 0.51 | 2.11 | 0.33 | 0.12 | 2.12 | 1.98 | 0.89 | 0.29 | 1.36 | 0.18 | 0.08 |
| SD | 3.24 | 2.31 | 0.99 | 0.37 | 2.60 | 0.19 | 0.15 | 1.70 | 3.90 | 0.27 | 0.14 | 2.57 | 0.12 | 0.04 |
| Median | 44.37 | 9.56 | 13.70 | 4.18 | 9.56 | 3.08 | 1.33 | 15.91 | 6.27 | 12.83 | 3.60 | 10.56 | 1.71 | 1.13 |
| Range | 20.75–52.24 | 5.48–29.58 | 7.00–36.05 | 1.79–7.67 | 1.78–52.24 | 1.00–5.98 | 0.00–6.32 | 15.51–20.00 | 1.67–34.72 | 3.97–22.33 | 0.97–6.44 | 0.97–34.72 | 0.89–8.29 | 0.00–5.50 |
| Mean | 39.12 | 13.06 | 18.00 | 4.45 | 16.62 | 2.92 | 1.57 | 17.14 | 10.81 | 14.36 | 3.65 | 11.24 | 2.67 | 1.25 |
| SD | 13.38 | 8.27 | 10.39 | 2.35 | 13.63 | 1.33 | 1.01 | 2.03 | 10.61 | 7.04 | 2.38 | 8.75 | 2.14 | 0.71 |
| Median | 0.426 | 0.08 | 0.203 | 0.029 | 0.113 | 0.017 | 0.006 | 0.128 | 0.060 | 0.089 | 0.016 | 0.060 | 0.008 | 0.004 |
| Range | 0.392–0.881 | 0.011–0.429 | 0.024–0.239 | 0.018–0.148 | 0.014–0.881 | 0.008–0.029 | 0.000–0.031 | 0.090–0.180 | 0.003–1.006 | 0.049–0.244 | 0.003–0.057 | 0.003–1.00 | 0.003–0.020 | 0.000–0.010 |
| Mean | 0.567 | 0.128 | 0.142 | 0.056 | 0.179 | 0.018 | 0.007 | 0.133 | 0.205 | 0.114 | 0.023 | 0.131 | 0.009 | 0.004 |
| SD | 0.223 | 0.136 | 0.085 | 0.053 | 0.202 | 0.007 | 0.005 | 0.037 | 0.335 | 0.072 | 0.020 | 0.218 | 0.005 | 0.002 |
| Median | 2.86 | 2.36 | 2.07 | 2.04 | 2.20 | 1.59 | 0.65 | 0.44 | 0.627 | 0.93 | 0.50 | 0.63 | 0.14 | 0.03 |
| Range | 1.92–6.06 | 1.65–6.25 | 1.24–7.06 | 1.39–8.21 | 1.24–8.21 | 0.67–3.77 | 0.00–4.13 | 0.40–1.39 | 0.07–8.27 | 0.35–1.38 | 0.07–1.09 | 0.07–8.27 | 0.03–0.29 | 0.00–0.10 |
| Mean | 3.61 | 3.12 | 2.96 | 3.42 | 3.19 | 1.98 | 0.82 | 0.74 | 1.65 | 0.83 | 0.54 | 1.06 | 0.15 | 0.03 |
| SD | 1.77 | 1.56 | 1.88 | 2.78 | 1.98 | 1.01 | 0.59 | 0.46 | 2.75 | 0.39 | 0.38 | 1.76 | 0.08 | 0.01 |
DBS; dried blood spot, VLCADD; very long-chain acyl CoA dehydrogenase deficiency, SD; standard deviation.
These data were extracted from the bottom values of VLCADD patients and the top values of heterozygous carriers and controls in the patients who were examined several times.
Primary data for each marker in serum and DBS.
| s-C14:1 (<0.2 μM) | Patients | Not affected | b-C14:1 (<0.3 μM) | Patients | Not affected | ||||
|---|---|---|---|---|---|---|---|---|---|
| Carriers | Control | Carriers | Control | ||||||
| Positive | 19 | 6 | 27 | 52 | positive | 14 | 2 | 0 | 16 |
| Negative | 3 | 4 | 158 | 165 | negative | 5 | 12 | 251 | 268 |
| 22 | 10 | 185 | 217 | 19 | 14 | 251 | 284 | ||
Accuracy of markers in serum and DBS.
| Serum | DBS | |||||||
|---|---|---|---|---|---|---|---|---|
| s-C14:1 | s-C14:1/C12:1 | s-C14:1/C2 | s-C14:1/C16 | b-C14:1 | b-C14:1/C12:1 | b-C14:1/C2 | b-C14:1/C16 | |
| Cutoff | (<0.2 μM) | (<4.0) | (<0.02) | (<2.0) | (<0.3 μM) | (<4.0) | (<0.013) | (<0.1) |
| Sensitivity | 0.864 | 0.727 | 0.737 | 0.737 | ||||
| Specificity | 0.831 | 0.954 | 0.928 | 0.974 | 0.958 | |||
| PPV | 0.365 | 0.690 | 0.533 | 0.875 | 0.667 | 0.607 | ||
| NPV | 0.982 | 0.989 | 0.968 | 0.981 | 0.981 | 0.992 | ||
| False-positive rate | 0.169 | 0.046 | 0.072 | 0.026 | 0.042 | |||
| False-negative rate | 0.136 | 0.273 | 0.263 | 0.263 | ||||
| Validity | 0.834 | 0.949 | 0.908 | 0.975 | 0.958 | 0.954 | ||
Cutoffs are used at Shimane University.
The most effective values are shown in bold.
PPV, positive predictive value; NPV, negative predictive value.
Validity is calculated as (real positive + real negative)/(number of sample).
Fig. 1ROC curve of serum and dried blood spots markers.
ROC, receiver operating characteristic; AUC, area under the ROC curve; DBS, dried blood spots; s-, serum; b-, blood (DBS).