Literature DB >> 31844191

Predicting coexistence in experimental ecological communities.

Daniel S Maynard1,2, Zachary R Miller3, Stefano Allesina3,4.   

Abstract

The study of experimental communities is fundamental to the development of ecology. Yet, for most ecological systems, the number of experiments required to build, model or analyse the community vastly exceeds what is feasible using current methods. Here, we address this challenge by presenting a statistical approach that uses the results of a limited number of experiments to predict the outcomes (coexistence and species abundances) of all possible assemblages that can be formed from a given pool of species. Using three well-studied experimental systems-encompassing plants, protists, and algae with grazers-we show that this method predicts the results of unobserved experiments with high accuracy, while making no assumptions about the dynamics of the systems. These results demonstrate a fundamentally different way of building and quantifying experimental systems, requiring far fewer experiments than traditional study designs. By developing a scalable method for navigating large systems, this work provides an efficient approach to studying highly diverse experimental communities.

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Mesh:

Year:  2019        PMID: 31844191     DOI: 10.1038/s41559-019-1059-z

Source DB:  PubMed          Journal:  Nat Ecol Evol        ISSN: 2397-334X            Impact factor:   15.460


  6 in total

1.  Soil-microorganism-mediated invasional meltdown in plants.

Authors:  Zhijie Zhang; Yanjie Liu; Caroline Brunel; Mark van Kleunen
Journal:  Nat Ecol Evol       Date:  2020-10-05       Impact factor: 15.460

2.  Predicting microbiome compositions from species assemblages through deep learning.

Authors:  Sebastian Michel-Mata; Xu-Wen Wang; Yang-Yu Liu; Marco Tulio Angulo
Journal:  Imeta       Date:  2022-03-01

3.  Ecology-guided prediction of cross-feeding interactions in the human gut microbiome.

Authors:  Akshit Goyal; Tong Wang; Veronika Dubinkina; Sergei Maslov
Journal:  Nat Commun       Date:  2021-02-26       Impact factor: 14.919

4.  Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant.

Authors:  Or Shalev; Talia L Karasov; Derek S Lundberg; Haim Ashkenazy; Pratchaya Pramoj Na Ayutthaya; Detlef Weigel
Journal:  Nat Ecol Evol       Date:  2022-02-24       Impact factor: 19.100

5.  Design of synthetic human gut microbiome assembly and butyrate production.

Authors:  Ryan L Clark; Bryce M Connors; David M Stevenson; Susan E Hromada; Joshua J Hamilton; Daniel Amador-Noguez; Ophelia S Venturelli
Journal:  Nat Commun       Date:  2021-05-31       Impact factor: 14.919

6.  Fine scale prediction of ecological community composition using a two-step sequential Machine Learning ensemble.

Authors:  Icíar Civantos-Gómez; Javier García-Algarra; David García-Callejas; Javier Galeano; Oscar Godoy; Ignasi Bartomeus
Journal:  PLoS Comput Biol       Date:  2021-12-06       Impact factor: 4.475

  6 in total

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