Literature DB >> 31843759

Accurate measurement of fast endocytic recycling kinetics in real time.

Caspar T H Jonker1, Claire Deo2, Patrick J Zager1, Ariana N Tkachuk2, Alan M Weinstein3, Enrique Rodriguez-Boulan4, Luke D Lavis5, Ryan Schreiner4.   

Abstract

The fast turnover of membrane components through endocytosis and recycling allows precise control of the composition of the plasma membrane. Endocytic recycling can be rapid, with some molecules returning to the plasma membrane with a half time <5 min. Existing methods to study these trafficking pathways utilize chemical, radioactive or fluorescent labeling of cell surface receptors in pulse-chase experiments, which require tedious washing steps and manual collection of samples. Here, we introduce a live-cell endocytic recycling assay based on a newly designed cell-impermeable fluorogenic ligand for HaloTag, Janelia Fluor 635i (JF635i, where i indicates impermeant), which allows real-time detection of membrane receptor recycling at steady state. We used this method to study the effect of iron depletion on transferrin receptor (TfR) recycling using the chelator desferrioxamine. We found that this perturbation significantly increases the TfR recycling rate. The high temporal resolution and simplicity of this assay provides a clear advantage over extant methods and makes it ideal for large scale cellular imaging studies. This assay can be adapted to examine other cellular kinetic parameters such as protein turnover and biosynthetic trafficking.
© 2020. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Endocytic recycling; Fluorophore; Trafficking kinetics

Mesh:

Year:  2020        PMID: 31843759      PMCID: PMC6983720          DOI: 10.1242/jcs.231225

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  31 in total

1.  A guided tour into subcellular colocalization analysis in light microscopy.

Authors:  S Bolte; F P Cordelières
Journal:  J Microsc       Date:  2006-12       Impact factor: 1.758

2.  HaloTag: a novel protein labeling technology for cell imaging and protein analysis.

Authors:  Georgyi V Los; Lance P Encell; Mark G McDougall; Danette D Hartzell; Natasha Karassina; Chad Zimprich; Monika G Wood; Randy Learish; Rachel Friedman Ohana; Marjeta Urh; Dan Simpson; Jacqui Mendez; Kris Zimmerman; Paul Otto; Gediminas Vidugiris; Ji Zhu; Aldis Darzins; Dieter H Klaubert; Robert F Bulleit; Keith V Wood
Journal:  ACS Chem Biol       Date:  2008-06-20       Impact factor: 5.100

3.  Turnover of the transferrin receptor is not influenced by removing most of the extracellular domain.

Authors:  E A Rutledge; C A Mikoryak; R K Draper
Journal:  J Biol Chem       Date:  1991-11-05       Impact factor: 5.157

4.  Transferrin recycling and dextran transport to lysosomes is differentially affected by bafilomycin, nocodazole, and low temperature.

Authors:  Günther Baravalle; Daniela Schober; Marlis Huber; Nora Bayer; Robert F Murphy; Renate Fuchs
Journal:  Cell Tissue Res       Date:  2005-02-16       Impact factor: 5.249

5.  Fiji: an open-source platform for biological-image analysis.

Authors:  Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

6.  Two saturable mechanisms of iron uptake from transferrin in human melanoma cells: the effect of transferrin concentration, chelators, and metabolic probes on transferrin and iron uptake.

Authors:  D R Richardson; E Baker
Journal:  J Cell Physiol       Date:  1994-10       Impact factor: 6.384

7.  A general method to improve fluorophores for live-cell and single-molecule microscopy.

Authors:  Jonathan B Grimm; Brian P English; Jiji Chen; Joel P Slaughter; Zhengjian Zhang; Andrey Revyakin; Ronak Patel; John J Macklin; Davide Normanno; Robert H Singer; Timothée Lionnet; Luke D Lavis
Journal:  Nat Methods       Date:  2015-01-19       Impact factor: 28.547

8.  Microhomology-mediated end-joining-dependent integration of donor DNA in cells and animals using TALENs and CRISPR/Cas9.

Authors:  Shota Nakade; Takuya Tsubota; Yuto Sakane; Satoshi Kume; Naoaki Sakamoto; Masanobu Obara; Takaaki Daimon; Hideki Sezutsu; Takashi Yamamoto; Tetsushi Sakuma; Ken-ichi T Suzuki
Journal:  Nat Commun       Date:  2014-11-20       Impact factor: 14.919

9.  A near-infrared fluorophore for live-cell super-resolution microscopy of cellular proteins.

Authors:  Gražvydas Lukinavičius; Keitaro Umezawa; Nicolas Olivier; Alf Honigmann; Guoying Yang; Tilman Plass; Veronika Mueller; Luc Reymond; Ivan R Corrêa; Zhen-Ge Luo; Carsten Schultz; Edward A Lemke; Paul Heppenstall; Christian Eggeling; Suliana Manley; Kai Johnsson
Journal:  Nat Chem       Date:  2013-01-06       Impact factor: 24.427

10.  Development of a dehalogenase-based protein fusion tag capable of rapid, selective and covalent attachment to customizable ligands.

Authors:  Lance P Encell; Rachel Friedman Ohana; Kris Zimmerman; Paul Otto; Gediminas Vidugiris; Monika G Wood; Georgyi V Los; Mark G McDougall; Chad Zimprich; Natasha Karassina; Randall D Learish; Robin Hurst; James Hartnett; Sarah Wheeler; Pete Stecha; Jami English; Kate Zhao; Jacqui Mendez; Hélène A Benink; Nancy Murphy; Danette L Daniels; Michael R Slater; Marjeta Urh; Aldis Darzins; Dieter H Klaubert; Robert F Bulleit; Keith V Wood
Journal:  Curr Chem Genomics       Date:  2012-10-05
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  10 in total

1.  Depolarizing NaV and hyperpolarizing KV channels are co-trafficked in sensory neurons.

Authors:  Grant P Higerd-Rusli; Matthew Alsaloum; Sidharth Tyagi; Nivedita Sarveswaran; Mark Estacion; Elizabeth J Akin; Fadia B Dib-Hajj; Shujun Liu; Daniel Sosniak; Peng Zhao; Sulayman D Dib-Hajj; Stephen G Waxman
Journal:  J Neurosci       Date:  2022-05-18       Impact factor: 6.709

2.  The complexin C-terminal amphipathic helix stabilizes the fusion pore open state by sculpting membranes.

Authors:  Kevin C Courtney; Lanxi Wu; Taraknath Mandal; Mark Swift; Zhao Zhang; Mohammad Alaghemandi; Zhenyong Wu; Mazdak M Bradberry; Claire Deo; Luke D Lavis; Niels Volkmann; Dorit Hanein; Qiang Cui; Huan Bao; Edwin R Chapman
Journal:  Nat Struct Mol Biol       Date:  2022-02-07       Impact factor: 18.361

3.  Synthesis and Characterization of Silk Ionomers for Layer-by-Layer Electrostatic Deposition on Individual Mammalian Cells.

Authors:  Onur Hasturk; Jugal Kishore Sahoo; David L Kaplan
Journal:  Biomacromolecules       Date:  2020-06-24       Impact factor: 6.988

4.  Interrogating surface versus intracellular transmembrane receptor populations using cell-impermeable SNAP-tag substrates.

Authors:  Pascal Poc; Vanessa A Gutzeit; Julia Ast; Joon Lee; Ben J Jones; Elisa D'Este; Bettina Mathes; Martin Lehmann; David J Hodson; Joshua Levitz; Johannes Broichhagen
Journal:  Chem Sci       Date:  2020-07-07       Impact factor: 9.825

5.  Unconventional endocytosis and trafficking of transferrin receptor induced by iron.

Authors:  Elena Gammella; Irene Schiano Lomoriello; Alexia Conte; Stefano Freddi; Alessandra Alberghini; Maura Poli; Sara Sigismund; Gaetano Cairo; Stefania Recalcati
Journal:  Mol Biol Cell       Date:  2020-11-25       Impact factor: 4.138

6.  Sulfonated red and far-red rhodamines to visualize SNAP- and Halo-tagged cell surface proteins.

Authors:  Ramona Birke; Julia Ast; Dorien A Roosen; Joon Lee; Kilian Roßmann; Christiane Huhn; Bettina Mathes; Michael Lisurek; David Bushiri; Han Sun; Ben Jones; Martin Lehmann; Joshua Levitz; Volker Haucke; David J Hodson; Johannes Broichhagen
Journal:  Org Biomol Chem       Date:  2022-08-03       Impact factor: 3.890

7.  N-Cyanorhodamines: cell-permeant, photostable and bathochromically shifted analogues of fluoresceins.

Authors:  Lukas Heynck; Jessica Matthias; Mariano L Bossi; Alexey N Butkevich; Stefan W Hell
Journal:  Chem Sci       Date:  2022-06-27       Impact factor: 9.969

Review 8.  Dysregulated Plasma Membrane Turnover Underlying Dendritic Pathology in Neurodegenerative Diseases.

Authors:  Chang Geon Chung; Sung Soon Park; Jeong Hyang Park; Sung Bae Lee
Journal:  Front Cell Neurosci       Date:  2020-10-06       Impact factor: 5.505

9.  Paclitaxel increases axonal localization and vesicular trafficking of Nav1.7.

Authors:  Elizabeth J Akin; Matthew Alsaloum; Grant P Higerd; Shujun Liu; Peng Zhao; Fadia B Dib-Hajj; Stephen G Waxman; Sulayman D Dib-Hajj
Journal:  Brain       Date:  2021-07-28       Impact factor: 13.501

10.  HaloFlippers: A General Tool for the Fluorescence Imaging of Precisely Localized Membrane Tension Changes in Living Cells.

Authors:  Karolína Straková; Javier López-Andarias; Noemi Jiménez-Rojo; Joseph E Chambers; Stefan J Marciniak; Howard Riezman; Naomi Sakai; Stefan Matile
Journal:  ACS Cent Sci       Date:  2020-07-20       Impact factor: 14.553

  10 in total

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