Literature DB >> 31843447

Effective and Accurate Gene Silencing by a Recombinant AAV-Compatible MicroRNA Scaffold.

Jun Xie1, Phillip W L Tai2, Alexander Brown2, Shoufang Gong2, Sha Zhu2, Yi Wang3, Chengjian Li4, Cansu Colpan5, Qin Su6, Ran He6, Hong Ma6, Jia Li2, Hanqing Ye2, Jihye Ko6, Phillip D Zamore7, Guangping Gao8.   

Abstract

Short hairpin RNAs that are delivered by recombinant adeno-associated virus (rAAV) have the potential to elicit long-term RNAi therapy for human disease. However, the discovery that short hairpin sequences can cause truncation of the rAAV genome calls into question the efficiency and gene-silencing specificity of this strategy in humans. Here, we report that embedding the guide strand of a small silencing RNA into an artificial microRNA (miRNA) scaffold derived from mouse miRNA-33 ensures rAAV genomic integrity and reduces off-targeting by 10-fold, while maintaining effective in vivo target gene repression in mice. Published by Elsevier Inc.

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Year:  2019        PMID: 31843447      PMCID: PMC7001000          DOI: 10.1016/j.ymthe.2019.11.018

Source DB:  PubMed          Journal:  Mol Ther        ISSN: 1525-0016            Impact factor:   11.454


  40 in total

1.  Artificial microRNAs as siRNA shuttles: improved safety as compared to shRNAs in vitro and in vivo.

Authors:  Ryan L Boudreau; Inês Martins; Beverly L Davidson
Journal:  Mol Ther       Date:  2008-11-11       Impact factor: 11.454

2.  An optimized microRNA backbone for effective single-copy RNAi.

Authors:  Christof Fellmann; Thomas Hoffmann; Vaishali Sridhar; Barbara Hopfgartner; Matthias Muhar; Mareike Roth; Dan Yu Lai; Inês A M Barbosa; Jung Shick Kwon; Yuanzhe Guan; Nishi Sinha; Johannes Zuber
Journal:  Cell Rep       Date:  2013-12-12       Impact factor: 9.423

3.  Short DNA Hairpins Compromise Recombinant Adeno-Associated Virus Genome Homogeneity.

Authors:  Jun Xie; Qin Mao; Phillip W L Tai; Ran He; Jianzhong Ai; Qin Su; Ye Zhu; Hong Ma; Jia Li; Shoufang Gong; Dan Wang; Zhen Gao; Mengxin Li; Li Zhong; Heather Zhou; Guangping Gao
Journal:  Mol Ther       Date:  2017-04-24       Impact factor: 11.454

4.  The loop position of shRNAs and pre-miRNAs is critical for the accuracy of dicer processing in vivo.

Authors:  Shuo Gu; Lan Jin; Yue Zhang; Yong Huang; Feijie Zhang; Paul N Valdmanis; Mark A Kay
Journal:  Cell       Date:  2012-11-09       Impact factor: 41.582

5.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

6.  Recombinant adeno-associated virus-mediated inhibition of microRNA-21 protects mice against the lethal schistosome infection by repressing both IL-13 and transforming growth factor beta 1 pathways.

Authors:  Xing He; Jun Xie; Dongmei Zhang; Qin Su; Xue Sai; Ruipu Bai; Chao Chen; Xufeng Luo; Guangping Gao; Weiqing Pan
Journal:  Hepatology       Date:  2015-04-15       Impact factor: 17.425

7.  Mammalian microRNAs predominantly act to decrease target mRNA levels.

Authors:  Huili Guo; Nicholas T Ingolia; Jonathan S Weissman; David P Bartel
Journal:  Nature       Date:  2010-08-12       Impact factor: 49.962

8.  Safe and effective superoxide dismutase 1 silencing using artificial microRNA in macaques.

Authors:  Florie Borel; Gwladys Gernoux; Huaming Sun; Rachel Stock; Meghan Blackwood; Robert H Brown; Christian Mueller
Journal:  Sci Transl Med       Date:  2018-10-31       Impact factor: 17.956

9.  Rescue and replication signals of the adeno-associated virus 2 genome.

Authors:  X S Wang; S Ponnazhagan; A Srivastava
Journal:  J Mol Biol       Date:  1995-07-28       Impact factor: 5.469

10.  Strand-specific libraries for high throughput RNA sequencing (RNA-Seq) prepared without poly(A) selection.

Authors:  Zhao Zhang; William E Theurkauf; Zhiping Weng; Phillip D Zamore
Journal:  Silence       Date:  2012-12-28
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  5 in total

1.  Suppression of heterotopic ossification in fibrodysplasia ossificans progressiva using AAV gene delivery.

Authors:  Yeon-Suk Yang; Jung-Min Kim; Jun Xie; Sachin Chaugule; Chujiao Lin; Hong Ma; Edward Hsiao; Jaehyoung Hong; Hyonho Chun; Eileen M Shore; Frederick S Kaplan; Guangping Gao; Jae-Hyuck Shim
Journal:  Nat Commun       Date:  2022-10-19       Impact factor: 17.694

Review 2.  AAV-Mediated Gene Therapy for Glycosphingolipid Biosynthesis Deficiencies.

Authors:  Huiya Yang; Robert H Brown; Dan Wang; Kevin A Strauss; Guangping Gao
Journal:  Trends Mol Med       Date:  2021-03-10       Impact factor: 11.951

3.  Bone-Targeting AAV-Mediated Gene Silencing in Osteoclasts for Osteoporosis Therapy.

Authors:  Yeon-Suk Yang; Jun Xie; Sachin Chaugule; Dan Wang; Jung-Min Kim; JiHea Kim; Phillip W L Tai; Seok-Kyo Seo; Ellen Gravallese; Guangping Gao; Jae-Hyuck Shim
Journal:  Mol Ther Methods Clin Dev       Date:  2020-04-18       Impact factor: 6.698

4.  Optimization of miR-22 expression cassette for rAAV delivery on diabetes.

Authors:  Li Yang; Wenya Du; Zhaoyue Zheng; Li Wang; Lin Xiao; Qingzhe Yang; Qiukui Hao; Jiao Zhou; Jintao Du; Jun Li; C Alexander Valencia; Birong Dong; Hoi Yee Chow; Xianghui Fu; Biao Dong
Journal:  Mol Biomed       Date:  2022-01-05

5.  AAV-mediated delivery of osteoblast/osteoclast-regulating miRNAs for osteoporosis therapy.

Authors:  Aijaz Ahmad John; Jun Xie; Yeon-Suk Yang; Jung-Min Kim; Chujiao Lin; Hong Ma; Guangping Gao; Jae-Hyuck Shim
Journal:  Mol Ther Nucleic Acids       Date:  2022-07-11       Impact factor: 10.183

  5 in total

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