Literature DB >> 31841788

Calculation of the thermal conductivity of human serum albumin (HSA) with equilibrium/non-equilibrium molecular dynamics approaches.

Abbas Zarenezhad Ashkezari1, Nitasha Adavoodi Jolfaei2, Niyusha Adavoodi Jolfaei3, Maboud Hekmatifar4, Davood Toghraie4, Roozbeh Sabetvand5, Sara Rostami6.   

Abstract

BACKGROUND AND
OBJECTIVE: Human serum albumin (HSA) controls the flow of numerous chemical structures and molecules in the cardiovascular system. So, thermal conductivity of this atomic compound is important in medicinal applications.
METHODS: In this work, the thermal conductivity of HSA is calculated with equilibrium/non-equilibrium molecular dynamic approaches. In these methods each HSA molecule is exactly represented by C, N, O and S atoms and their implemented dreiding potential. Finally by using Green-Kubo and Fourier's law the thermal conductivity of HSA/H2O mixture is calculated.
RESULTS: Our calculated rates for thermal conductivity via equilibrium/non-equilibrium molecular dynamics methods are 0.496 W/m K and 0.448 W/m K, respectively. The calculated thermal conductivity for this structure was very close to the thermal conductivity calculated for water molecules which were reported by other research groups. Furthermore our simulated structures show that thermal conductivity of HAS/H2O mixtures has inverse relation with HAS molecules numbers and temperature of simulated atomic structures.
CONCLUSIONS: Comparing thermal conductivity from equilibrium/non-equilibrium molecular dynamics methods for HAS/H2O shows that EMD and NEMD results are reliable and EMD calculated results are higher than NEMD results.
Copyright © 2019. Published by Elsevier B.V.

Entities:  

Keywords:  Heat flux; Human serum albumin; Molecular dynamic simulation; Thermal conductivity

Mesh:

Substances:

Year:  2019        PMID: 31841788     DOI: 10.1016/j.cmpb.2019.105256

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  2 in total

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Authors:  Omid Malekahmadi; Akbar Zarei; Mohammad Behzad Botlani Esfahani; Maboud Hekmatifar; Roozbeh Sabetvand; Azam Marjani; Quang-Vu Bach
Journal:  J Therm Anal Calorim       Date:  2020-11-21       Impact factor: 4.626

2.  Molecular dynamics performance for coronavirus simulation by C, N, O, and S atoms implementation dreiding force field: drug delivery atomic interaction in contact with metallic Fe, Al, and steel.

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  2 in total

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