Typhoid fever among febrile Nigerian patients: Prevalence, diagnostic performance of the Widal test and antibiotic multi-drug resistance.

Background: Over-dependence on clinical presentation and/or the Widal agglutination test for the diagnosis of typhoid fever in developing countries can lead to antibiotic abuse. In Nigeria, the antibiotic resistance of typhoid organisms is poorly characterized. In this study, we determined the prevalence of culture positivity among patients suspected of having typhoid fever, evaluated the diagnostic value of the Widal test and the burden created by the multi-drug resistance of typhoid organisms in South-East Nigeria. Methodology: This was a prospective and case-controlled study carried out between 2013 and 2016. We acquired samples of blood/stool/urine cultures, and data relating to the Widal agglutination test and malaria parasites from 810 febrile patients (suspected of having typhoid) and 288 apparently healthy controls. Individuals with a history of antibiotic use within the previous 14 days were excluded. We then carried out antibiotic susceptibility tests on all isolates. Multi-drug resistance was defined as a resistance to ≥3 of the antibiotics tested. We determined the sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) of Widal test for typhoid laboratory diagnosis compared to bacterial culture which is the gold standard. A P-value <0.05 was considered to be statistically significant.
Results: The mean age of typhoid suspects was 33.1±6.5 years and 50.7% were women. Of the 810 typhoid suspects tested, 114 (14.1%) had positive cultures for the typhoid organisms Salmonella enterica serovar paratyphi (72) and S. enterica serovar Typhi (42). Sample-specific rates of culture positivity were as follows: stool (72; 8.9%), blood (21; 2.6%) and urine (21; 2.6%), P<0.001. None of the controls had typhoid isolates. The sensitivity, specificity, PPV and NPV of the Widal test were 49.1%, 90.7%, 46.2% and 91.6%, respectively. Malaria parasitaemia was detected in 180 (22.2%) febrile patients, out of whom 115 (63.9%) had a positive Widal test for O/H antigens vs. 1% (6/630) in those with negative malaria parasite test results (P<0.001). The rate of false-positive Widal titres was 48%. Antibiotic multi-drug resistance was detected in 52.6% of patients. The antibiotics with the highest susceptibility were ciprofloxacin, levofloxacin and meropenem (all 100% susceptibility) and ceftriaxone (95.6% susceptibility).
Conclusion: Our data showed that while typhoid fever is common in Nigeria, malaria is more prevalent. Our analysis showed that the Widal test performed poorly as a diagnostic test and that the burden created by multi-drug resistance was high. Our data indicate that periodic surveillance of antibiotic susceptibility is critical for optimal typhoid therapy.

Introduction

Typhoid fever is an acute and sometimes life-threatening systemic febrile illness caused by Salmonella enterica serovar Typhi (S. typhi) and S. enterica serovar paratyphi (S. paratyphi) A, B or C. Although the disease caused by S. paratyphi has traditionally been thought to run a more benign course1,2, recent observations have indicated that S. paratyphi has an almost identical clinical syndrome to S. typhi3.Typhoid is transmitted by water and food which are contaminated by faeces; human beings are the only known reservoir. Typhoid remains a global public health problem with a higher burden in low- and middle-income countries (LMICs) due to poverty, limited access to safe water and unhygienic practices4. In 2000, there were 21.6 million new cases of typhoid fever, 210,000 typhoid fever-related deaths and 5.4 million cases of paratyphoid fever5. In 2010, Buckle et al. estimated that there were 13.9–26.9 million cases of typhoid fever worldwide6. Without effective treatment, typhoid fever is associated with a case-fatality rate of 10–30%, although this reduces to 1–4% in those receiving appropriate therapy5. Only a limited amount of data are available for the burden created by typhoid in several LMICs. Consequently, there is growing interest in carrying out studies of disease burden created by typhoid fever in these settings7–9. The Typhoid Fever Surveillance in Africa Program (TSAP) was established by the International Vaccine Institute to acquire comparable incidence data on typhoid fever and invasive non-typhoidal Salmonella (iNTS) disease in sub-Saharan Africa. This program adopted standardized surveillance protocols in a number of different countries, including Burkina Faso, Ethiopia, Ghana, Guinea- Bissau, Kenya, Madagascar, Senegal, South Africa, Sudan and Tanzania7. Each TSAP site carried out case detection using standardized methods to isolate and identify aerobic bacteria from the bloodstream of febrile patients. Incidentally, despite being one of the most populous countries in Africa, Nigeria is not among the TSAP sentinel countries. Using a mixed-effects model, which was fitted to data originating from 32 population-based studies of typhoid incidence in 14 countries (including some TSAP sentinel countries), Antillon et al. previously estimated that 17.8 million cases of typhoid fever occur each year in LMICs. Moreover, Central Africa was predicted to experience the highest incidence of typhoid, followed by certain countries in Central, South, and Southeast Asia8.

The isolation of S. typhi from blood or bone marrow is considered to represent the gold standard for the diagnosis of typhoid10. Although stools and urine are not sterile sites, and but considering blood culture is often unsuccessful, the isolation of S. typhi from urine or stools remains relevant in the diagnosis of typhoid, particularly in individuals with compatible clinical features. However, one must consider that the culture of such samples requires laboratory equipment and expertise that are not readily available in most primary health centres in resource-limited settings11. On the other hand, the Widal agglutination test is relatively affordable, easy to perform and requires minimal equipment or expertise. However, the Widal test has several limitations12–15. For example, Widal test cannot distinguish between a current infection and a previous infection or vaccination against typhoid. Widal test shows cross-reactivity with other Salmonella species. Physicians in developing countries are often faced with the challenge of making treatment decisions on the basis of compatible clinical symptoms alone or a combination of clinical symptoms and Widal results obtained from a single acute-phase sample16–19. These factors lead to high rates of inaccurate typhoid diagnosis, inappropriate antibiotic therapy, considerable antibiotic multi-drug resistance (MDR) and potentially worse outcomes19. Despite the growing concern related to antibiotic MDR in the management of typhoid fever, only a few studies have assessed the current burden created by this disease in sub- Saharan Africa. We determined the prevalence of typhoid fever (as confirmed by culture) among patients presenting with acute febrile illness in a major referral hospital in South- East Nigeria. We also assessed the diagnostic value of the Widal test using single acute-phase samples and determined the pattern of antibiotic susceptibility pattern and MDR in typhoid isolates.

Methods

Study design/study area

This was a prospective case-controlled study conducted at the University of Nigeria Teaching Hospital (UNTH), Ituku/Ozalla, Enugu. The UNTH is the largest referral centre in South-East Nigeria. In 2014, the estimated population of Enugu state was 4,139,59820 with a population density of approximately 460 people per square kilometre. Furthermore, approximately 47.5% of households in Enugu state have improved sources of drinking water, while only 19% have improved sanitary facilities that are not shared by more than one family21.

Study population

We recruited patients between 1 June 2013 and 31 May 2016 attending the outpatients clinic at UNTH. We recruited a total of 810 consecutive typhoid fever suspects (141 children aged <18 years and 669 adults ≥18 years) presenting with fever (axillary temperature >37.5°C) and any two of our inclusion criteria (abdominal pain or discomfort, headache, constipation or diarrhoea). We focused on body temperature in our inclusion criteria (rather than the history of fever, which is largely subjective) in order to make our blood culture surveillance more sensitive. During the same period, 288 apparently healthy individuals (48 children <18 years and 240 adults ≥18 years), who were mostly the relatives of the patients, were recruited as controls and were matched with the patients for age and gender. Individuals who had received antibiotics within the previous 14 days were excluded; this limited the impact of prior antibiotic use on our culture results.

Ethical considerations

Ethics approval was obtained from the Health Research and Ethics Committee of the UNTH (Reference number: UNTH/CSA/329/VOL.5; Registration number: NHREC/05/01/2008B-FWA 00002458-IRB 2323). Written (signed) informed consent was obtained from each participant before enrolment and confidentiality was assured.

Sample collection and cultures

Prior to the administration of antibiotics, we collected blood, urine and stool samples from each of the 810 typhoid suspects for culture. Blood, urine and stool cultures were also processed for the 288 controls. Blood cultures were performed by aseptically introducing 10 ml of blood sample into brain heart infusion and thioglycolate-containing liquoid media, as described previously by Baron and Finegold22. Subcultures from positive blood cultures were performed using blood agar and storing them as stock until the isolates were completely identified as typhoid organisms.

Approximately 1g of stool sample from each participant was suspended in 5 ml of sterile saline solution and inoculated into appropriate types of bacteriological agar before and after enrichment with selenite-F broth. Specimen and subcultures of stools were plated onto MacConkey and deoxycholate agars (Oxoid) and incubated for 24–48hours at 37°C. The resultant suspect colony growths were examined for Salmonella using standard methods23.

Fresh colonies are non-lactose fermenting, circular, smooth, glossy, and translucent with delicate nature. S typhi ferments maltose, glucose and manitol producing acid but no gas. It reduces sulphide in triple sugar iron agar to produce a black colour. Urease test was performed to rule out Proteus spp among others. Suspected isolates were subjected to rigorous serological identification to species level after performing a preliminary identification with polyvalent Salmonella O antiserum (Oxoid). Slide agglutination was first used and positive results were confirmed by tube tests23.

For each participant, 10 ml of urine was centrifuged at 3000 rpm for 15 minutes and the resulting sediment inoculated onto cysteine lactose electrolyte deficient (CLED) agar before and after enrichment with selenite-F broth. The resultant suspect colony growths were examined for Salmonella by standard methods23.

During the processing/analysis of samples, we used relevant standard operating procedures (SOPs) of the Microbiology Department such as SOP for specimen collection, transportation and processing, SOP for microbiological safety practices, SOP for processing of blood/other sample cultures, Culture media quality control SOP and SOP for antimicrobial susceptibility testing. All instruments were periodically checked and calibrated by hospital biomedical engineers.

Widal agglutination test

Sera samples from each of the 810 typhoid suspects and 288 controls were used to carry out a semi-quantitative Widal agglutination test; this was performed using the standard tube dilution procedure24 and Salmonella antigen kits manufactured by Gamma Biologicals Inc. (Houston, TX, USA). In accordance with the manufacturer's protocol, we used an antibody titre of ≥1:80 for O antigen, and a titre of ≥1:160 for H antigen, as cut-off values for positive titres. A negative saline control was used for each batch of Widal tests.

Testing for antibiotic susceptibility/resistance

The pattern of antibiotic susceptibility and resistance was identified for each isolate; tests involved the agar diffusion method using Muller-Hinton agar (Oxoid, Basingstoke, UK) against ampicillin (10 µg), amoxicillin-clavulanic acid (30 µg), cefuroxime (30 µg), ceftriaxone (30 µg), ceftazidime (30 µg), ciprofloxacin (5 µg), ofloxacin (5 µg), levofloxacin (5 µg), meropenem (10 µg), erythromycin (15 µg), tetracycline (30 µg), trimethoprim-sulphamethoxazole (25 µg) and chloramphenicol (30 µg). MDR was defined as resistance of an isolate to three or more of the antibiotics tested19.

Malaria parasite test

For each participant, we carried out Giemsa staining on both thick and thin blood films for the microscopic identification of malaria parasites. These procedures were carried out in accordance with standard protocols described by the World Health Organization (WHO)25.

Data analysis

Data analysis was carried out using Statistical Package for Social Sciences (SPSS) version 20 (IBM, Chicago, Illinois, United States). Test of normality for the population sample was done using the Kolmogorov-Smirnov's test. Categorical variables are presented as proportions while continuous variables are presented as mean ± standard deviation (SD) if distributed uniformly. Categorical variables were compared using the chi-square test. Mean values were compared using the Student's t-test while non-normally distributed continuous data were compared using the Kruskal-Wallis test. Sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) were calculated for Widal cut-off titres using culture as the gold standard and a P-value <0.05 was considered to be statistically significant.

Results

The socio-demographic characteristics of the study participants are shown in Table 1. The age of the febrile patients ranged from 12 to 59 years while that of the control group ranged from 12 to 60 years. There was no statistically significant difference between the mean ages of the typhoid suspects (33.1±6.5 years) and the controls (34.7±3.2; P=0.32). There was a marginally higher proportion of females in each of the two groups. The mean duration of febrile illness was 7.6±3.5 days (range: 1–19 days).

Table 1

Socio-demographic characteristics of febrile patients and controls

Variable	Febrile patients (N=810) n (%)	Controls (N=288) n (%)	P-value
Age group (years)
<20a	150 (18.5)	53 (18.4)	0.67
21–30	219 (27.0)	74 (25.7)
31–40	279 (34.4)	106 (36.8)
41–50	111 (13.7)	40 (13.9)
51–60	51 (6.3)	15 (5.2)
Gender
Female	411 (50.7)	148 (51.4)	0.85
Male	399 (49.3)	140 (48.6)
Location of residence
Urban	660 (81.5)	231 (80.2)	0.66
Rural	150 (18.5)	57 (19.8)

Age group <20 years. For febrile patients, this includes 141 children aged between 12 and 17 years and 9 adults aged between 18 and 19 years. For the controls, this includes 48 children aged between 12 and 17 years and 5 adults aged between 18 and 19 years.

Data relating to the febrile patients with positive cultures are shown in Table 2. Of the 810 patients tested, 114 (14.1%) were bacteriologically positive for typhoid pathogens. None of the controls had typhoid isolates. Of the 114 patients with positive cultures, S. typhi was isolated in 42 (36.8%) cases while S. paratyphi A (n=41), B (n=20), and C (n=11) strains were isolated from another 72 (63.2%). When data for individual samples were analysed in the 810 typhoid suspects, the rates of culture positivity were as follows: stool (72; 8.9%), blood (21; 2.6%) and urine (21; 2.6%); there was a statistically significant difference in this respect (P<0.001). When testing individual samples from patients with positive isolates, we found that stool samples yielded predominantly S. paratyphi (79.2%), while blood and urine samples yielded predominantly S. typhi (35.7% and 25.5%, respectively); these differences were statistically significant (P<0.001). Of the 21 typhoid suspects with a positive blood culture result, 7 (33.3%) also had a positive stool culture. Febrile patients with a positive culture result were significantly younger (28.4±4.6 years vs 37.7±8.3 years, P=0.0002) and significantly more women had a positive culture result than men (64 [15.6%] vs 50 [12.5%]; P=0.21).

Table 2

Typhoid culture results of febrile patients in Enugu, Nigeria

	Blood	Urine	Stool	P-value
Culture result (N=810), n (%)
Positive	21 (2.6)	21 (2.6)	72 (8.9)	<0.001
Negative	789 (97.4)	789 (97.4)	738 (91.1)
Isolates
S. paratyphi (N=72), n (%)	6 (8.3)	9 (12.5)	57 (79.2)	<0.001
S. typhi (N=42), n (%)	15 (35.7)	12(25.5)	15 (35.7)

The clinical features of the febrile patients are summarized in Table 3. Only anorexia (P=0.02), constipation (P=0.02), abdominal pain/discomfort (P<0.001), splenomegaly (P<0.001) and relative bradycardia (P<0.001) showed statistically significant differences when compared with the clinical features of febrile patients with negative typhoid culture results.

Table 3

Clinical features of patients evaluated for typhoid fever in Enugu, Nigeria

Parameter	Typhoid suspects N= 810 n (%)	Typhoid culture [+ve] N=114 n (%)	Typhoid culture [−ve] N=696 n (%)	P-value
Fever	810 (100.0)	114 (100.0)	696 (100.0)	1.00
Headache	641 (79.1)	87 (76.3)	554 (79.6)	0.42
Anorexia	553 (68.3)	89 (78.1)	464 (66.7)	0.02
Diarrhoea	470 (58.0)	72 (63.2)	398 (57.2)	0.23
Constipation	130 (16.0)	27 (23.7)	104 (14.9)	0.02
Abdominal discomfort/pain	432 (53.3)	102 (89.5)	330 (47.4)	<0.001
Vomiting	384 (47.4)	62 (54.4)	322 (46.3)	0.12
Pallor	93 (11.5)	11 (9.6)	82 (11.8)	0.51
Jaundice	19 (2.3)	2 (1.8)	17 (2.5)	0.65
Hepatomegaly	125 (15.4)	23 (20.2)	102 (14.7)	0.13
Splenomegaly	45 (5.6)	20 (17.5)	25 (3.6)	<0.001
Tachycardia	404 (49.9)	58 (50.9)	346 (49.7)	0.82
Relative bradycardia	23 (2.8)	14 (12.3)	9 (1.3)	<0.001

The Widal titres for febrile patients with typhoid fever (confirmed by culture) and febrile patients without typhoid (culture negative) are shown in Tables 4 and 5, respectively. Of the 114 febrile patients with culture-confirmed typhoid fever, 63 (55.3%) individuals had positive Widal titres for the O antigen while 6 (5.3%) had positive Widal titres for the H antigen. Of the 696 febrile patients with negative culture results, 46 (6.6%) and 31 (4.5%) had positive Widal titres for O and H antigens, respectively. All 288 of the apparently healthy control subjects had Widal titres ≤1:40 for O antigen; only 2 (0.69%) of these subjects had titres of ≥1:160 for the H antigen (data not shown).

Table 4

Widal titres of febrile patients with typhoid fever, as confirmed by culture

Titre	O-antigen		H-antigen
	Frequency	% (N=114)	Frequency	% (N=114)
<1:20	15	13.2	30	26.3
1:20	6	5.3	15	13.2
1:40	30	26.3	45	39.5
1:80	15	13.2	18	15.8
1:160	36	31.6	6	5.3
1:320	6	5.3	0	0
1:640	6	5.3	0	0
Total	114	100	114	100

Table 5

Widal titres of febrile patients who were negative for typhoid culture

Titre	O antigen		H antigen
	Frequency	% (N=696)	Frequency	% (N=696)
<1:20	546	78.4	583	83.8
1:20	60	8.6	33	4.7
1:40	44	6.3	24	3.4
1:80	40	5.7	25	3.6
1:160	6	0.9	28	4.0
1:320	0	0	3	0.4
1:640	0	0	0	0
Total	696	100	696	100

Of the 810 febrile patients, a total of 180 (22.2%) had malaria parasitaemia, all due to Plasmodium falciparum. Of these 180 patients, 115 (63.9%) had a positive Widal test for O/H antigens compared with only 1% (6/630) for those with negative malaria parasite test results (P<0.001). However, the frequency of positive typhoid culture results among febrile patients with malaria parasitaemia was not significantly different from that of febrile patients with a negative malaria parasite test (15.6% vs 13.7%, P=0.52). Therefore, 48.3% of the febrile patients with malaria parasitaemia had a false-positive Widal test.

The sensitivity, specificity, PPV and NPV of the overall positive Widal titre (both antigens) was 49.1%, 90.7%, 46.2% and 91.6%, respectively (Table 6). The antibiotic susceptibility profile of the typhoid isolates is presented in Table 7. None of the isolates showed resistance to ciprofloxacin, levofloxacin or meropenem. There was only low levels of resistance to ceftriaxone (4.4%) and ofloxacin (12.3%). However, isolates showed high levels of resistance to erythromycin (100%), ampicillin (93.9%), amoxicillin-clavulanate (78.1%), tetracycline (71.9%), cefuroxime (66.7%) and co-trimoxazole (66.7%). The patterns of susceptibility for S. typhi and S. paratyphi were comparable and the overall rate of antibiotic resistance to three or more agents was 52.6% (Table 8).

Table 6

Sensitivity, specificity, PPV and NPV of titres for anti-O (≥1:80) and anti-H (≥1:160) Widal tests in the diagnosis of typhoid fever among febrile patients in Enugu, Nigeria

Measurement	O antigen (%)	H antigen (%)	Both antigens (%)
Sensitivity	55.3	0.9	49.1
Specificity	93.3	95.5	90.7
PPV	57.7	16.2	46.2
NPV	92.7	86.0	91.6

PPV, positive predictive value; NPV, negative predictive value

Table 7

Patterns of antibiotic sensitivity/resistance in bacterial isolates among febrile patients with typhoid fever, as confirmed by culture

	S. typhi (N=42)		S. paratyphi (N=72)		Total (N=114)
Antibiotic	Sensitive n (%)	Resistant n (%)	Sensitive n (%)	Resistant n (%)	Sensitive n (%)	Resistant n (%)
Ampicillin	2 (4.8)	40 (95.2)	5 (6.9)	67 (93.1)	7 (6.1)	107 (93.9)
Amoxicillin-Clavulanate	10 (23.8)	32 (76.2)	15 (20.8)	57 (79.2)	25 (21.9)	89 (78.1)
Ceftriaxone	41 (97.6)	1 (2.4)	68 (94.4)	4 (5.6)	109 (95.6)	5 (4.4)
Ceftazidime	33 (78.6)	9 (21.4)	55 (76.4)	17 (23.6)	88 (77.2)	26 (22.8)
Cefuroxime	19 (45.2)	23 (54.8)	19 (26.4)	53 (73.6)	38 (33.3)	76 (66.7)
Ciprofloxacin	42 (100.0)	0 (0.0)	72 (100.0)	0 (0.0)	114 (100.0)	0 (0.0)
Ofloxacin	36 (85.7)	6 (14.3)	64 (88.9)	8 (11.1)	100 (87.7)	14 (12.3)
Chloramphenicol	22 (52.4)	20 (47.6)	43 (59.7)	29 (40.3)	65 (57.0)	49 (43.0)
Levofloxacin	42 (100.0)	0 (0.0)	72 (100.0)	0 (0.0)	114 (100.0)	0 (0.0)
Meropenem	42 (100.0)	0 (0.0)	72 (100.0)	0 (0.0)	114 (100.0)	0 (0.0)
Tetracycline	12 (28.6)	30 (71.4)	20 (27.8)	52 (72.2)	32 (28.1)	82 (71.9)
Co-trimoxazole	16 (38.1)	26 (61.9)	22 (30.6)	50 (69.4)	38 (33.3	76 (66.7)
Erythromycin	0 (0.0)	42 (100.0)	0 (0.0)	72 (100.0)	0 (0.0)	114 (100.0)

Table 8

Patterns of antibiotic multi-drug resistance (MDR) in isolates from febrile patients with typhoid fever, as confirmed by culture

MDR pattern	S. typhi (N=42) n (%)	S. paratyphi (N=72) n (%)	Total (N=114) n (%)
R3	8 (19.0)	18 (25.0)	26 (22.8)
R4	6 (14.3)	6 (8.3)	12 (10.5)
R5	4 (9.5)	10 (13.9)	14 (12.3)
R6	2 (4.8)	4 (5.6)	6 (5.3)
R7	1 (2.4)	1 (1.4)	2 (1.8)
TOTAL	21 (50.0)	39 (54.2)	60 (52.6)

Discussion

Based on bacteriological evidence, the prevalence of typhoid fever in this study was 14.1%. Previous studies have reported comparable prevalence data of 11.3% to 18.7% among febrile patients26–28. In one previous study, Maude et al.26 reported that 11.3% of a group of 300 febrile adults/children in Bangladesh were positive for typhoid, as determined by blood culture and polymerase chain reaction (PCR) for S. typhi. In another study, involving 1375 febrile patients from all age groups in Nepal, Adhikari et al. found that 17.3% had typhoid fever based on positive blood culture results for S. typhi27 while Ramyil et al. reported a prevalence of 18.7% for typhoid fever among adults/children in North-Central Nigeria, as diagnosed by stool culture28. In contrast to our findings, some previous studies reported a higher typhoid prevalence of 22.1% to 55% among febrile patients in various settings in Africa and Asia when using blood cultures29–32. Other studies in sub-Saharan Africa have reported a lower prevalence of culture-proven typhoid fever, ranging from 1% to 5%13,19,33–35. Beyond the variable epidemiology of typhoid fever across different environments, there are a number of factors that could explain the disparity between our present findings and these earlier studies. For example, a previous study of Indian subjects reported a typhoid fever prevalence as high as 55%32; however, the participants in this study were all children. This was further supported by our own observation that typhoid fever tends to be commoner among younger individuals; a phenomenon that has also been reported by other authors36–38. The distribution of gender within the study population may also contribute to the observed differences. For example, a number of studies have reported a male dominance among typhoid fever cases27,28,36, although Chowta et al. reported female dominance39. We did not observe any differences between genders among our study population. Sample size could also contribute to the disparity in results between our current study and previous studies. Interestingly, the sample size of our study was 3 to 10 times higher than that of previous studies reporting a higher prevalence of typhoid. It is possible that the previous use of antibiotics by the participants of previous studies could also have affected the prevalence rates.

The type of culture could also influence the observed prevalence of typhoid fever. For example, while several of the existing studies only carried out blood cultures26,27,29–32, Elseed et al. cultured blood, urine and stools35. In other studies, Gopalakrishnan et al., Nsutebu et al. Eleazar et al. and cultured both blood and stools31,33,40 while Ramyil et al. only carried out stool culture28. In a retrospective analysis of 130 patients with typhoid fever who presented at a tertiary-care hospital in Tokyo between 1975 and 1998, positive cultures were most frequently found in blood (81%), followed by stool (50%) and urine (2.1%)36. In a study of Egyptian patients, Youssef et al. found that the rate of recovery of S. typhi from blood culture decreased with the duration of symptoms and fell from 72% in the first week, to 21% of patients with symptoms in the second week, and to 7% in patients with symptoms in excess of 15 days41. While stools are considered to be less specific than blood for the isolation of pathogens, the performance of simultaneous blood, urine and stool cultures increases the probability of detection. This is considered important in the African setting where late presentation is common; when patients present late it is possible that the blood cultures may not be positive.

Our analysis showed that S. paratyphi was more common than S. typhi and accounted for 63.2% of the total number of cases with culture-proven typhoid fever. However, S. typhi was the more commonly detected pathogen in blood and urine samples. Generally, S. typhi remains the main causative organism of typhoid fever and has been more frequently isolated by blood culture1,19,27,31,32,34. Nevertheless, there is evidence to suggest that the incidence of typhoid fever caused by S. paratyphi may be increasing33,42,43. Furthermore, S. paratyphi tends to cause a milder disease than S. typhi and this may partly explain the absence of classical typhoid fever complications in our patients.

The most common clinical features in our patients with positive typhoid cultures were fever, abdominal pain/discomfort, anorexia, headache, diarrhoea, vomiting and tachycardia. However, only anorexia, constipation, abdominal pain/discomfort, splenomegaly and relative bradycardia showed statistically significant differences when compared with the clinical features of febrile patients with negative typhoid cultures. In accordance with our observations, fever (90–100%)1,27,33,36,39,42, headache (50–98%)1,27,33,42 and anorexia (65–90%)1,27,33 were the most consistent findings among typhoid fever patients in other settings. Although diarrhoea (19–56%)27,33,36,39,42, abdominal pain (11–48%)27,33,39,42 and vomiting (20–46%)27,33,42 were commonly reported buy other studies, the proportions of individuals with these symptoms were lower than that seen in our current study.

Though the confirmatory diagnosis of typhoid fever is by the isolation of S. typhi or S. paratyphi from appropriate samples, most developing countries, such as Nigeria, have continued to depend on the Widal test, largely due to limited laboratory facilities for culture and more modern tests based on nucleic acids. In the present study, the overall sensitivity, specificity, PPV and NPV of the Widal test were 49.1%, 90.7%, 46.2% and 91.6%, respectively. The low sensitivity of the Widal test shows that the test has only low ability to correctly identify individuals who actually have typhoid fever and therefore does not represent a good test for screening.

The PPV represents the proportion of patients with a disease that are correctly identified. Hence, our findings suggest that a positive Widal test would have a low predictive value for the presence of typhoid fever and as such would be a poor diagnostic test. Specificity is the probability that a truly infected individual will test positive while NPV is the probability that those testing negative are truly non-infected. Accordingly, our data suggest that a negative Widal test may be useful for excluding typhoid fever in the differential diagnosis of acute febrile illness. This may be helpful in tropical countries since such regions are associated with a plethora of diseases that can cause acute febrile illness. A major challenge in the comparison of findings across different studies is the variable cut-off titres for a positive Widal reaction. In agreement with our findings, Adhikari et al. showed that a Widal test performed on acute phase serum in febrile patients in an endemic population in Nepal had low sensitivity (45.2%) and PPV (34.2%) but high specificity (82.3%) and NPV (87.8%)27. Another study, conducted in Egypt, indicated that a negative Widal test result would have a good predictive value (NPV= 98%) while a positive result would have a poor predictive value (PPV=57%)40. The poor diagnostic performance of a single Widal test in endemic regions has been demonstrated in other studies13,19,33,34,44. In contrast to these observations, two studies carried out in endemic settings in India (PPV=91%, NPV=31%) and Bangladesh (PPV=81.1%, NPV=31.7%) found that a single Widal test was a relevant diagnostic tool for typhoid fever32,45. One of these previous studies found that the cut-off titre for a positive test was 1:80 for both O and H antigens32. Beyond this, it is possible that the relatively small sample size of these earlier studies may partly account for their observations.

Our present study identified malaria parasitaemia in one-fifth of the typhoid suspects, suggesting that malaria is a more common cause of acute febrile illness in our environment. A high proportion of individuals with malaria parasitaemia had positive Widal reactions, a phenomenon that has been observed in other studies29,33. The co-existence of malaria parasitaemia and culture-proven typhoid fever was only seen in 15.6% of our patients, which showed that 48% of the patients with malaria parasitaemia would have been misdiagnosed of typhoid fever if we had relied on the Widal test alone. In a previous study, Enabulele et al. reported a co-infection of typhoid fever and malaria in 20% of febrile Nigerian patients and demonstrated a statistically significant association between the severity of malaria parasitaemia and a positive Widal test29. False-positive Widal titres among febrile patients with malaria parasitaemia have been previously documented and are thought to be due to the cross-reactivity of the antigen46. It is possible that the malaria parasite Plasmodium may share similar strong immunogenic antigens with the typhoid organism S. typhi. Infection by P. falciparum could therefore evoke the production of antibodies against antigens that will cross-react with S. typhi antigens in the test kit, thus leading to a false positive result. This theory is supported by the strong correlation observed between malaria parasite loading and Salmonella antibody titres in previous studies29,46. A heightened anamnestic response among febrile parasitaemic patients, thus leading to the production of antibodies that can bind strongly to shared similar antigens, could also contribute to false positive Widal titres in febrile patients with malaria parasitaemia. These findings suggest that the indiscriminate use of the Widal test could lead to the over-diagnosis of typhoid fever and the unnecessary use of antibiotics in patients with malaria.

The over-prescription of antibiotics for typhoid fever in developing countries with weak antibiotic policies, based on clinical suspicion and/or a single Widal test, poses a significant risk for the emergence of antibiotic resistance. One of the earliest studies conducted in South- West Nigeria (20 years ago) demonstrated high levels of resistance (ranging from 51% to 91%) of typhoid isolates to commonly used agents (ampicillin, chloramphenicol, co-trimoxazole, tetracycline and cefotaxime) but showed 100% susceptibility to ciprofloxacin and ofloxacin, which had been newly developed at that time47. Another report from North- Central Nigeria, more than 10 years later, showed evidence of MDR for S. typhi involving both old and new drugs48; however, the exact burden of MDR was not quantified in this previous study. Previous studies in Africa also confirmed a changing pattern of antibiotic resistance and MDR in typhoid isolates49,50. This highlights the need for a periodic update of the pattern of antibiotic susceptibility for typhoid isolates.

Our study showed high levels of resistance (22.8–100%) for typhoid isolates to several older and relatively newer antibiotics. Our patients showed no resistance to ciprofloxacin, levofloxacin and meropenem while only 4.4% showed resistance to ceftriaxone; 52.6% of our patients showed resistance to three or more antibiotic agents. Our findings are in agreement with previous studies from sub- Saharan Africa which found MDR in 50% and 52% of typhoid isolates in Ethiopia and Ghana, respectively19,51. A large population-based study in Kenya found that S. typhi isolates had a much higher MDR of 77.8%52. On the other hand, Jamil et al. reported MDR in 36% of typhoid pathogens in Pakistan42. In a surveillance study carried out in Asia, Ochiai et al. demonstrated considerable geographic variation in the proportion of typhoid isolates that were MDR within the same region37, thus making a strong case for local evidence-based antibiotic guidelines. The wide distribution and growing prevalence of MDR among typhoid isolates has led to fluoroquinolones assuming a primary role in the treatment of typhoid fever. However, over time, the widespread use of these agents has been associated with reduced susceptibility and documented resistance in some populations53,54. Despite this growing concern, the findings of our present study suggest that ciprofloxacin, ofloxacin and ceftriaxone can be sustained as first-line antibiotic options for typhoid fever in our setting. Levofloxacin and carbapenems would be better reserved for cases that are resistant to the current first-line options.

To the best of our knowledge, this is one of the most recent attempts to characterize the burden of MDR in the typhoid pathogens of Nigeria. A major strength of our study was the large sample size. Our data were also more robust than in other studies because we carried out cultures simultaneously on blood, stools and urine samples. Another strength is the inclusion of levofloxacin and meropenem; these drugs are being increasingly prescribed on an empirical basis, although their effectiveness has been rarely assessed in local studies. Nevertheless, this study had some limitations which need to be considered. First, we were unable to exclude whether our patients were carriers of Salmonella; thus, it is difficult to verify whether some febrile patients with stool isolates were just carriers. Moreover, stools are not sterile. Consequently, we might only be able to refer to these patients as possible cases of typhoid fever cases despite the bacteriological evidence. Although we made efforts to select our control group from the relatives of the cases with typhoid, this proved to be difficult. Thus, we had a good number of controls that were not related to the typhoid suspects. In addition, among the controls who were relatives of the typhoid cases, some were adults that lived in separate homes from the typhoid cases. These demographic differences probably explain why the Widal titres in our control group were not higher than in the general population. Another limitation of this study was that we were unable to perform Widal titres on samples from convalescents. Although some patients had follow-up clinic visits (ranging from 1 to 4 weeks after their initial visit), it was difficult to get Widal tests performed on these samples from convalescent patients. We excluded individuals who reported the previous use of antibiotics. Antibiotic abuse is fairly common in developing countries; as such, we were careful to limit the impact of previous antibiotic use on culture results. However, we recognize the fact it might not be entirely accurate to depend upon patient reports to exclude individuals with a history of recent antibiotic use. Although we used measured body temperature as an inclusion criterion for fever, rather than a history of fever, in order to increase the sensitivity of our blood culture surveillance, it is possible that this practice could potentially have led to a higher rate of culture-positive typhoid suspects in this study. On the other hand, it is also possible that we could have missed some typhoid cases with body temperatures that were lower than our threshold. At the time of this study, only an adult blood culture system was available in our hospital. As a result, we were only able to include children who were between 12 and 17 years of age. Children less than 12 years were not included because we could not acquire a culture medium system with a small enough volume for paediatric cases.

Conclusion

In conclusion, this study found that culture positivity among typhoid fever suspects was common. Salmonella enterica serovar paratyphi was more commonly isolated than S. enterica serovar Typhi. The Widal agglutination test performed poorly as a diagnostic test. We also observed that malaria was a more common cause of febrile illness and was associated with a high proportion of false-positive Widal titres. The prevalence of antibiotic MDR was high and predominantly affected older drugs and a few of the newer agents. We suggest that ciprofloxacin and ceftriaxone can be sustained as first-line antibiotic options for typhoid fever while levofloxacin and carbapenems would be better reserved for cases that are resistant to the current first-line options. There is a clear need for a periodic review of the antibiotic susceptibility of typhoid pathogens.