Prapenpuksiri Rungsa1,2, Piyapon Janpan1,2, Yutthakan Saengkun1,2, Nisachon Jangpromma1, Sompong Klaynongsruang1, Rina Patramanon1, Nunthawun Uawonggul3, Jureerut Daduang4, Sakda Daduang1,2. 1. Protein and Proteomics Research Center for Commercial and Industrial Purposes (ProCCI), Department of Biochemistry, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand. 2. Division of Pharmacognosy and Toxicology, Faculty of Pharmaceutical Sciences, Khon Kaen University, Khon Kaen 40002, Thailand. 3. Faculty of Science, Nakhon Phanom University, Nakhon Phanom, 48000, Thailand. 4. Centre for Research and Development of Medical Diagnostic Laboratories, Faculty of Associated Medical Sciences, Khon Kaen University, Khon Kaen, Thailand.
Abstract
BACKGROUND: Crude venom of the banded tiger waspVespa affinis contains a variety of enzymes including hyaluronidases, commonly known as spreading factors. METHODS: The cDNA cloning, sequence analysis and structural modelling of V. affinis venom hyaluronidase (VesA2) were herein described. Moreover, heterologous expression and mutagenesis of rVesA2 were performed. RESULTS: V. affinis venom hyaluronidase full sequence is composed of 331 amino acids, with four predicted N-glycosylation sites. It was classified into the glycoside hydrolase family 56. The homology modelling exhibited a central core (α/β)7 composed of Asp107 and Glu109, acting as the catalytic residues. The recombinant protein was successfully expressed in E. coli with hyaluronidase activity. A recombinant mutant type with the double point mutation, Asp107Asn and Glu109Gln, completely lost this activity. The hyaluronidase from crude venom exhibited activity from pH 2 to 7. The recombinant wild type showed its maximal activity at pH 2 but decreased rapidly to nearly zero at pH 3 and was completely lost at pH 4. CONCLUSION: The recombinant wild-type protein showed its maximal activity at pH 2, more acidic pH than that found in the crude venom. The glycosylation was predicted to be responsible for the pH optimum and thermal stability of the enzymes activity.
BACKGROUND: Crude venom of the banded tiger waspVespa affinis contains a variety of enzymes including hyaluronidases, commonly known as spreading factors. METHODS: The cDNA cloning, sequence analysis and structural modelling of V. affinis venom hyaluronidase (VesA2) were herein described. Moreover, heterologous expression and mutagenesis of rVesA2 were performed. RESULTS: V. affinis venom hyaluronidase full sequence is composed of 331 amino acids, with four predicted N-glycosylation sites. It was classified into the glycoside hydrolase family 56. The homology modelling exhibited a central core (α/β)7 composed of Asp107 and Glu109, acting as the catalytic residues. The recombinant protein was successfully expressed in E. coli with hyaluronidase activity. A recombinant mutant type with the double point mutation, Asp107Asn and Glu109Gln, completely lost this activity. The hyaluronidase from crude venom exhibited activity from pH 2 to 7. The recombinant wild type showed its maximal activity at pH 2 but decreased rapidly to nearly zero at pH 3 and was completely lost at pH 4. CONCLUSION: The recombinant wild-type protein showed its maximal activity at pH 2, more acidic pH than that found in the crude venom. The glycosylation was predicted to be responsible for the pH optimum and thermal stability of the enzymes activity.
Hyaluronidase is an enzyme family that catalyze the hydrolysis of hyaluronic acid
(HA) and several other glycosaminoglycan constituents of the extracellular matrix of
vertebrates. It is often found in all types of animal venom [1, 2, 3]. Venom toxin cocktails comprise
high-molecular weight molecules, such as phospholipases A (PLA), hyaluronidases,
antigen 5 and acid phosphatase, low-molecular weight compounds and peptides such as
hemolytic peptides, antimicrobial peptides, and amines [4, 5, 6, 7,
8]. In animal venoms, hyaluronidases
degrade hyaluronic acids in extracellular matrix and are generally referred to as
“spreading factors” that enhance envenomation by increasing the absorption and
diffusion rate of systemic venom toxins in the circulation of prey [9]. Venom hyaluronidases have also been
identified as major allergens of scorpions, bees, hornets and wasps, which can
induce serious and occasionally fatal systemic IgE-mediated anaphylactic reactions
in humans [1, 10-12]. Several studies have
reported the purification and characterization of venom hyaluronidases from spider
[13, 14], scorpion [15, 16], conus [17], snake [18, 19, 20],
freshwater stingray [9] and wasp [21].The hyaluronidase from Hymenoptera venom is relatively conserved. Hymenoptera stings
represent one of the three major causes of anaphylaxis worldwide [5], including serious symptoms after
envenomation [22, 23]. Vespa affinis, the tiger wasp, are mostly
found in the Asia-Pacific region, including Thailand. The nests of V.
affinis are typically located in the trees of forests near human
habitats, which results in a record-breaking number of stinging accidents every year
[24].The venom of V. affinis is lethal. Sukprasert et al. [25] reported a paralytic dose (PD50)
of approximately 12.2 µg/g of body weight in crickets (Gryllus
sp.). The major venom allergen proteins are PLA, with 100% allergenicity, and
hyaluronidase, with 53.3% allergenicity [24].
Additionally, the proteomic analysis of V. affinis venom performed
by Rungsa et al. [26] detected venom
hyaluronidases, which are major venom proteins. Anti-hyaluronidase serum inhibited
or delayed the occurrence of large tissue damage, potentially allowing a more
efficient clinical management of the victim [27, 28].In the present study, the cDNA encoding V. affinis hyaluronidase was
sequenced. The amino acid sequences were also deduced. The in
silico prediction of its higher-level protein structures was performed.
A mutant type with amino acid substitutions at the catalytic site was produced to
elucidate their functions. The activity of recombinant mutant type was comparatively
characterized in relation to that of the wild-type protein.
METHODS
Materials
The worker wasp V. affinis was obtained from Nakornphanom
Province, Thailand. The venom glands were dissected and kept at -80°C. The
bacterial strains and the ImPromII Reverse Transcription System kit was acquired
from Invitrogen Life Technologies (USA). We purchased the pET32a expression
plasmid from Novagen (USA).The present study was approved by the Animal Ethics Committee of Khon Kaen
University based on the Ethics for Animal Experimentation of the National
Research Council of Thailand (Reference. 0514.1.12.2/1).
Protein biochemistry
One-dimensional polyacrylamide gel electrophoresis was performed following
standard methods, using 13% (w/v) separating gels and 4% (w/v) stacking gels.
The low molecular-weight marker (GE Healthcare, USA) was used as the protein
standard. The gel was separated at 150 volts for 80 min. After separation, the
gel was stained with Coomassie blue R-250 staining solution. The protein band
was excised from the 13% SDS-PAGE gel. An in-gel digestion was performed
according to the previous description from Rungsa et al. [29]. The gel was digested using trypsin solution (20 ng
trypsin in 50% ACN/10% ammonium bicarbonate) following a standard method
described by the Research Instrument Center, Khon Kaen University, Thailand. The
sample was analyzed with a nano-LC (EasynLC II, Bruker Daltonics, USA) coupled
to an ion trap mass spectrometer (Amazon Speed ETD, Bruker, USA) equipped with
an ESI nano-sprayer. LC-MS/MS spectra were analyzed using Compass Data Analysis
v. 4.0. Compound lists were exported as Mascot generic files (mgf) for further
analysis in the Mascot program [26].
Cloning and isolation of cDNA encoding
Total RNA was extracted from the V. affinis venom gland using
TRIzol® reagent (Invitrogen Life Technologies, USA). First-strand DNA synthesis
was performed using a RevertAid First stand cDNA synthesis Kit (Thermo
Scientific, USA) following the manufacturer’s instructions for the PCR
amplification of encoded sequences. The amplification of hyaluronidase genes was
performed using master mix reagent kits with Taq DNA polymerase (Vivantis,
Malaysia). The primers were described by Rungsa et al. [27, 30]. The 3'rapid
amplification of cDNA ends (3'RACE) was carried out according to the kit’s
instruction manual (Invitrogen Life Technologies, USA) using gene-specific
primers and AUAP universal primers. The PCR products were purified using
GenepHlow Gel Extraction kits (Geneaid, Taiwan) and cloned into a pGEM®-T easy
vector (Promega, USA) for sequencing [29,
31].
Sequence alignments, the prediction of secondary structure and homology
modelling
The V. affinis hyaluronidase sequence (VesA2) was analyzed using
FinchTV and BLAST (http://www.ncbi.nlm.nih.gov/BLAST/), and a multisequence
alignment was carried out using Multiple Sequence Alignment Clustal Omega
(https://www.ebi.ac.uk/Tools/msa/clustalo). The ExPasy tool was used to
translate the sequence (https://web.expasy.org/translate/). The protein sequence
was examined with the SWISS-MODEL for three-dimensional structure prediction.
The structure was investigated with the PDB viewer program (PDB;
http://swissmodel.expasy.org/) and Chimera software
(https://www.cgl.ucsf.edu/chimera/download.html). The stereochemical quality
validation of the model was confirmed using Ramachandran plot. The
N-glycosylation prediction was performed using the CBS
prediction severs (http://www.cbs.dtu.dk/services/NetNGlyc/). The free web
server DiANNA (http://clavius.bc.edu/~clotelab/DiANNA/) was used to predict the
formation of disulfide bonds.
Cloning and expression of the recombinant gene in
The wild-type V. affinis hyaluronidase was amplified by
polymerase chain reaction (PCR). The forward and reverse primers contained
Kpn I and Not I restriction sites,
respectively. The PCR-amplified products were sequentially subjected to 1.2%
agarose gel electrophoresis, double digestion with Kpn
I/Not I restriction enzymes and cloning into a pre-digested
pET32a expression vector following the manufacturer’s instructions. The
constructs were transformed into Escherichia coli BL-21 (DE3)
chemically competent cells, plated on Luria Bertani (LB) agar plates containing
ampicillin and incubated at 37ºC overnight. The colony was verified by colony
PCR and analyzed by DNA sequencing using an Automated PCR sequencer (First base,
Malaysia) [32].
Site-directed mutagenesis
Site-directed mutagenesis was carried out using splicing by overlapping extension
PCR to create the mutant V. affinis hyaluronidase following
previous studies [33]. The mature
V. affinis hyaluronidase in the pGEM-T easy vector was used
as the template for mutagenesis. The two sites were chosen for PCR-based
site-directed mutagenesis (Table 1). The
Pfu DNA polymerase was used for the amplification the
recombinant mutant type. The mutant VesA2 was poly-A-tailed by
Taq polymerase and cloned into the pGEM-T easy vector. The
positive clones were verified by colony PCR. The cDNA encoding hyaluronidase was
subcloned into pET32a.
Table 1.
Gene-specific primers that were designed in this study
F-Kpn I primer
5'-GGTACCTCCGAGAGACCGAAAAAAG-3'
R-Not I primer
5'-GCGGCCGCAGTTAACGGCTTCTGTCA-3'
F-mutant
5'-GGTATAATCAACTTTCAAAGATGGAGA-3'
R-mutant
5'-TCTCCATCTTTGAAAGTTGATTATACC-3'
Small-scale expression and optimization of the expression conditions
The E. coli cells containing the recombinant V.
affinis hyaluronidase gene (wild-type and mutant) were grown in 5
mL LB liquid medium containing 50 µg/mL ampicillin at 37°C overnight. A total of
50 µL of pre-cultured cells was added to 5 mL fresh LB liquid medium until the
OD600 reached 0.4-0.6. The isopropyl-β-D-thiogalactopyranoside
(IPTG) concentration, induction time and temperature for the expression of
foreign proteins in E. coli BL-21(DE3) were optimized. Under 15
and 37°C, IPTG was added to each fresh subculture (OD600 = 0.5) with
different final concentrations (0, 0.1, 0.2, 0.3, 0.4, 0.5, 1 and 1.5 mM) and
was incubated for additional 24 hours for the optimization of the IPTG
concentration. For the optimization of the induction time, subcultures were
incubated for additional times (non-induction, 4, 6, 8, 10 hours and overnight)
with optimal conditions of the IPTG concentration and induction temperature. The
temperature induction was performed at various temperatures (15°C and 37°C). All
liquid subcultures were collected and then mixed with 2x solubilizing solution
(v/v: 1/1) [0.5 M Tris-HCl, pH 6.8, 10% (v/v) glycerol, 10% (w/v) sodium dodecyl
sulfate (SDS) and 1% (w/v) bromophenol blue] and heated at 100°C for 10 min for
analysis using SDS-PAGE to choose the optimal culture parameters.
Up-scale expression and purification of recombinant proteins
For the up-scale expression of recombinant V. affinis
hyaluronidase, the optimal expression conditions were used. The recombinant
V. affinis hyaluronidase was cultured in 10 mL LB liquid
medium containing 50 µg/mL ampicillin at 37°C overnight. Fresh LB liquid medium
(1 L) containing 50 µg/mL ampicillin was incubated with 10 mL overnight culture
until the OD600 reached 0.3-0.8, and IPTG was added at the optimized
concentration. The E. coli cells were harvested by
centrifugation at 5000 × g for 10 min at 4°C, suspended in 30 mL of lysis buffer
(50 mM Tris-HCl, pH 8, 100 mM NaCl, 1 mM DTT, and 0.1 mg/mL lysozyme) and lysed.The recombinant protein was detected in the insoluble fraction. The cell pellet
was washed using 20 mM Tris-HCl, pH 8 and 2 M urea. Then, it was solubilized in
20 mM Tris-HCl, pH 8 and 1 mM DTT containing 4 M urea with stirring at room
temperature for 3 hours. The soluble fraction was collected after centrifugation
(10000 × g, 30 min) and kept at -20°C until use. The soluble fraction was
dialyzed using reducing urea concentrations (20 mM Tris-HCl, pH 8, 10% glycerol
and 2 M or 0 M urea, respectively). The refolded protein was purified using
His-gravitrap column (GE healthcare, USA) following manual instruction in 20 mM
Tris-HCl, pH 8, under a step-wise imidazole concentration. The purified protein
was concentrated using Centricon® 30 kDa filters and used for the enzymatic
testing.
Hyaluronidase activity assay
The zymographic gel hyaluronidase activity assay was performed using 13% SDS-PAGE
containing 0.5 mg/mL hyaluronic acid (Sigma, USA) as a substrate. The gel was
incubated in 3% Triton X-100 for 1 hour, transferred to the hyaluronidase assay
buffer (0.15 M NaCl in 0.1 M formate buffer pH 3.7) for 16 hours. After that,
gels were stained in Alcian Blue solution (0.5% Alcian Blue in 3% acetic acid)
and destained in 7% acetic acid until the clear band was appeared [34].A turbidity hyaluronidase activity assay was performed in a reaction mixture
containing 100 μg crude venom/fraction, 0.5 mg/mL hyaluronic acid and 0.2 M
formate buffer, pH 3, containing 0.15 M NaCl and was incubated for 30 min at
37°C. A 2% cetyltrimethylammonium bromide (CTAB) (w/v) solution containing 2.5%
NaOH (w/v) was used to stop the reaction, and the absorbance was measured at 405
nm. One unit of hyaluronidase enzyme activity has been defined as the quantity
of the enzyme that reduce the turbidity equal to one unit of international
standard preparation after incubating with substrate at 37°C for 30 min at pH 4
[35].
The effect of pH and temperature on the activity assay
The optimum pH of the recombinant enzyme was determined using 50 mM formate
buffer (pH 2-4), 50 mM sodium acetate buffer (pH 5-6) and 50 mM Tris-HCl buffer
(pH 7-10). The pH stability was investigated by preincubating the enzyme at each
pH for 30 min at 37°C and then measuring the residual activities. The optimum
temperature was analyzed over a range of 30-80°C, and the thermostability was
investigated by preincubating the enzyme in the absence of substrate for the
indicated times at 50 and 60°C and then measuring the residual activities [27].
Results
Sequencing and structural analysis
The full length of the wild-type V. affinis venom hyaluronidase
gene (VesA2) was determined with classical strategies, using mRNA from the venom
gland as the template. The full nucleotide sequence of VesA2 was 1145 bp in
length and had 152 bp in the 3'untranslated region (3'UTR). The prediction
revealed that the primary sequence of the wild-type V. affinis
hyaluronidase polypeptide (VesA2) contained 331 amino acids (Figure 1). The theoretical average mass was
39.0487 kDa whereas the theoretical isoelectric point (pI) was 9.16. Four
potential N-glycosylation sites (Asn-Xaa-Thr/Ser, where Xaa is
any amino acid residue except proline), Asn79, Asn99, Asn187 and Asn325, and two
disulfide bridges, C19-C185 and C197-C308, were predicted. The amino acid
residues Asp and Glu, which are commonly found in active sites, usually acting
as catalytic residues, were observed at positions 107 and 109, respectively
[36].
Figure 1.
The complete nucleotide and predicted amino acid sequences of
The red italic capital letters (“D” for Asp and
“E” for Glu) indicate the catalytic residues of the active sites.
Four cysteine residues (“C”) - indicated with blue triangles - form
two disulfide bonds. Based on the in silico
prediction, the two bonds were C19-C185 and C197-C308. The four
predicted N-glycosylation sites (asparagine, “N”)
are indicated with blue letters. The peptides from the LC-MS/MS
analysis are shown in the red boxes.
The generation of a mutant protein with the substitution of Asp107 and Glu109 to
Asn107 and Gln109 was carried out with site-directed mutagenesis strategies.
Oligonucleotide primers containing the restriction enzyme cutting sites for
Kpn I and Not I were synthesized and used
for PCR techniques to obtain Asp107Asn and Glu109Gln substitution mutations
(Table 1). The mutations were
successfully produced. The subsequent nucleotide sequencing, prediction and
NCBI-BLAST search confirmed the presence of these substitutions (Figure 2). The predicted amino acid sequences
showed high homology to the V. affinis hyaluronidase sequences
from LC-MS/MS analysis [26].
Figure 2.
The amino acid sequence comparison of wild-type and mutant
VesA2. The nucleotide guanine 319 (g319) and guanine 225
(g325) in the wild-type sequence were changed to adenine (a319) and
cytosine (c325) in the mutant sequence. These replacements caused
the amino acid aspartic acid (Asp 107) to change to asparagine (red
letters), and glutamic acid (Glu109) changed to glutamine (yellow
letters).
Multiple sequence alignment and homology modelling
The wild-type VesA2 sequence alignment showed high homology to active wasp venom
hyaluronidase: 96.67% Vespa tropica (VesT2a), 96.07%
Vespa magnifica (Ves ma2), 90.05%
Dolichovespula maculata (Dol m2), 91.54% Vespa
germanica (Ves g) and 91.23% Vespula vulgaris (Ves
v2a). The wild-type VesA2 showed less homology to those in inactive forms of
wasp venom hyaluronidase: 58.61% Vespula vulgaris (Ves v2b) and
61.93% VesT2b (Figure 3).
Figure 3.
Multiple alignments among the primary sequence of wasp venom
hyaluronidases. Stars designate identical residues.
Colons and dots indicate similar residues. The catalytic residues
(“D” and “E”) are indicated with red stars. VesA2w is the wild-type
VesA2. VesA2m is the mutant VesA2. Vesma2 (Vespa
magnifica), VesT2 (Vespa tropica)
Vesv2 (Vespula vulgaris), Dolm2
(Dolichovespula maculata), and VesG
(Vespa germanica) are shown. The small “a” and
“b” of Vesv2 and VesT2 indicate “active” and “inactive”
hyaluronidases, respectively.
The constructed three-dimensional structure model of VesA2 using the SWISS-MODEL
protein homology modelling server was performed based on two templates with
structures perfectly clarified from crystallography. Those templates were
hyaluronidases from wasp venom (V. valgaris; Ves v 2; 2ATM)
(Figure 4) and bee venom hyaluronidase
(Apis mellifera; Api m2; 2J88) (data not shown) [36, 37]. The Ves v 2 and Api m2 templates showed 91.23 and 52.74%
sequence identity, respectively, to VesA2. Bee venom hyaluronidase, Api m2, was
composed of three parts: hyalurononglucosaminidase A, Fab B and Fab C. VesA2
showed high similarity to the hyalurononglucosaminidase A part [38].
Figure 4.
The ribbon representation of the predicted three-dimensional
structural modelling of VesA2. (A) The structure of
wild-type VesA2 (blue ribbon) using Vespula
vulgaris venom hyaluronidase (PDB ID: 2ATM) as the
template. (B) The superimposition of wild-type VesA2 (blue), mutant
VesA2 (green) and 2ATM (Vespula vulgaris venom
hyaluronidase, pink ribbon). The catalytic residues in the active
sites are indicated (Asp107 and Glu109). The mutant strains
contained Asn107 and Gln109. The labels on the top show the
catalytic resides of the venom hyaluronidases from the
databases.
From Ramachandran plot, phi and psi conformation angels of VesA2 backbone for
each residues of amino acid were displayed (data not shown). Plot statistics of
the model exhibited 90.4% of the residues in favored regions, 9.3% in additional
allowed regions, 0% in generously allowed regions and 0.4% in disallowed regions
[39]. VesA2 is composed of seven
α-helices and seven β-sheets belonging to the glycoside hydrolase family 56
(E.C. number 3.2.1.35). Figure 4 shows that
the position and orientation of the catalytic site and other conserved residues
coincide fairly well. The substrate-adjacent residues fell into three regions.
The residue contact substrate can be presumed to be involved in binding and
substrate recognition. Asp107 and Glu109 are common catalytic residues of
Hymenoptera venom hyaluronidase that are found in the active sites. Tyr51,
Tyr180, Tyr223 and Typ296 are nearby residues that function proximally to the
cleavage point of the substrate and are likely to have been in contact with a
transition state and/or the released portion of the cleaved HA chain.
Recombinant wild-type and mutant VesA2 expression
The mature recombinant VesA2 was subcloned into the pET32a expression vector
containing a 6xHis tag and a thioredoxin fusion at the N-terminus. These tags
are useful for recombinant protein expression and solubilization. The peptide
mass fingerprints from the LC-MS/MS analysis subsequently searched by Mascot
search of wild-type and mutant type rVesA2 revealed high similarity to the
hyaluronidase of V. magnifica venom (Table 2).
Table 2.
Identification of wild-type and mutant recombinant hyaluronidase
(VesA2) of Vespa affinis venom
The expression conditions of the wild-type and mutant rVesA2 for maximal
over-expression were the induction with 0.1 mM IPTG at 37°C for 4 hours. The
wild-type protein exhibited high zymographic gel hyaluronidase activity (Figure 5), whereas the mutant type completely
lost this activity (data not shown). The overexpressed protein band from
heterologous expression in E. coli was approximately 59 kDa on
an SDS denaturing gel, corresponding to a transparent band in the blue
background of the zymographic gel of the hyaluronidase activity assay. The size
(approximately 59 kDa) was larger than the theoretical mass (~39 kDa) and was
the summation of the VesA2 gene and tags. However, the process of solubility
with sonication revealed that the recombinant proteins were insoluble in the
aqueous-based buffer commonly known as inclusion bodies (data not shown). The
solubility test by SDS-PAGE showed that rVesA2 mainly appeared in the insoluble
fraction. To increase the solubility of the recombinant proteins, 4 and 6 M urea
were used (Figure 6). After the
renaturation of recombinant wild type and mutant type, the hyaluronidase
activity was recovered based on an analysis using turbidity hyaluronidase
activity assay (Figure 7B and Figure 8B). The recovery yields of both
recombinant types ranging from 13.0 to 22.5 mg per 1 liter of culture media.
During induction, temperature may be a variable. Therefore, the temperature was
varied from 15 to 37°C, and the inclusion bodies remained a problem (data not
shown).
Figure 5.
Wild-type recombinant VesA2 (rVesA2) expression in Wild-type rVesA2
expression. Lanes 1 and 2 were analyzed by SDS-PAGE, and lanes 3 and
4 were assayed for hyaluronidase activity.
Figure 6.
Solubility of wild-type and mutant VesA2. The wild-type
rVesA2 was solubilized in 4 M urea (lane 1). The mutant protein was
solubilized in 6 M urea (Lane 2)
Figure 7.
The optimal pH of (A)
(A) The crude venom showed relatively high
hyaluronidase activity at low and neutral pH. (B) The
wild-type rVesA2 showed activity at pH 2-3 and completely lost its
activity at pH 4 (blue line). The mutant rVesA had no enzymatic
activity (red line).
Figure 8.
The optimal temperature of (A)
The optimal temperatures were tested in buffer at pH 2.
(A) The crude venom showed high hyaluronidase
activity at 25 to 60°C and completely lost hyaluronidase activity at
70°C. (B) The wild-type rVesA2 showed activity at 25 to
60°C (blue line). The mutant had no hyaluronidase activity (red
line).
Hyaluronidase activity of the wild-type and mutant rVesA2
A hyaluronidase activity test with a turbidity assay showed that the V.
affinis venom had activity at pH ranging from 2 to 10, with maximal
activity at pH 6 (Figure 7A). The
recombinant rVesA2 had activity around pH 2 to 3, with an optimal pH at 2. The
mutant protein completely lost its activity from pH 2 to 10 (Figure 7B). The optimal temperature for venom
hyaluronidase was 25°C but the protein was still active at 60°C (Figure 8A). The activity was completely lost
after incubation at 70°C for 30 mins (data not shown).
Discussion
Wasp venoms are complex mixtures of biologically active proteins and peptides [5, 21,
25, 26, 40]. Interestingly, Rungsa et
al. [27] reported that the antivenoms or
inhibitors of the hyaluronidase enzyme increased the venom toxicity. These enzymes
are described as spreading factors that facilitate the distribution of other venom
components through tissues, causing highly potent and fast acting venom toxicity
[1, 20]. In addition, the high enzymatic activity of these proteins are from
crude venom found in the venom gland, which has a low protein quantity. However, the
molecular cloning of V. affinis hyaluronidase was performed to
attempt to produce the recombinant protein, which is similar to that of the natural
sources. The gene encoding VesA2 was cloned into E. coli using the
pET32a vector. The double Asp107Asn and Glu109Gln mutant protein was prepared. Both
the wild-type and mutant proteins were expressed and refolded. The rVesA2 wild-type
and mutant proteins were assayed for hyaluronidase activity with a turbidity assay,
including evaluating their optimal temperature and optimal pH.In a previous report, hyaluronidase from the venom of V. affinis had
a molecular weight of approximately 43 kDa based on 2D-PAGE and LC-MS/MS analysis
[26]. The sequence analysis of VesA2 showed a molecular weight of approximately
39.04 kDa. The 43-kDa mass protein was 4 kDa higher than the theoretical mass and
was predicted to be the result of the carbohydrate moiety attachment. Hymenoptera
venom-derived hyaluronidases are always post-translationally glycosylated, which
causes extensively higher allergenic properties in the venom [36, 37]. The
cross-reactivity carbohydrate determinant (CCD) contributed the immunogenicity in
Hymenoptera venom, such as bee venom or wasp venom [37, 41]. The Hymenoptera stings
represent one of the three major causes of anaphylaxis worldwide [5].Recombinant Ves v 2, originally from V. vulgaris venom, a
representative wasp venom hyaluronidase, was modelled and structurally analyzed
[36]. Those proteins, including VesA2,
were classified in the glycoside hydrolase family 56 (E.C. number 3.2.1.35) [42, 43].
Based on the three-dimensional model structure, VesA2 is composed of seven β-sheets
and seven α-helices with a central core (α/β)7 [1]. Four cysteines are the most conserved residues among active
venom hyaluronidase since they produce two disulfide bridges that stabilize their
three-dimensional structure.Hymenoptera venom hyaluronidase is relatively conserved, with molecular weights
ranging from 33 to 40 kDa. The molecular weight of this venom protein was dependent
on the CCD to the polypeptides [44, 45]. These proteins are
N-glycosylated, which exerts a direct influence on the
immunogenicity [41]. The four residues for
VesA2 that were N-linked were Asn79, Asn99, Asn187 and Asn325.
Asn79 and Asn99 corresponded to the native Ves v 2 [36]. Aspartate and glutamate residues commonly serve as the catalytic
residues of Hymenoptera hyaluronidase. Marković-Housley et al. [37] reported that Asp111 and Glu113 of bee
venom hyaluronidase were proton donors for catalysis. These residues corresponded to
Asp107 and Glu109 in many kinds of wasp venom, including Ves v 2 and VesA2 from this
study. Aspartate and glutamate act as proton donors, whereas the
N-acetyl carboxyl groups of the substrate hyaluronic acid (HA) act
as nucleophilic bases [37, 46]. Meanwhile, four residues, including
tyrosine at position 51, 180, 223 and tryptophan at 296, are nearby residues that
function proximally to the cleavage point of the substrate and are likely in contact
with a transition state and/or the released portion of the cleaved HA chain.Previous studies verified the catalytic residues of wasp venom hyaluronidases using
in silico structural analysis. To confirm two catalytic
residues (Asp107 and Glu109) using in vitro
system, the present work constructed the mutant type of VesA2
by the double point mutation of Asp107 and Glu109 in order to investigate their
individual contributions to the enzymatic activity. The structure of Asn and Gln are
basically similar to Asp and Glu, but the R-side chains are converted from acid to
the amide groups. The mutant with the double point mutation completely lost its
enzymatic activity. These phenomena have been reported previously [46]. The Asn and Gln lack dissociated protons,
therefore, are incapable of substitution as general acid/base [47].For gene expression, the attempts to obtain a recombinant hyaluronidase from the
venom of social Hymenoptera in E. coli have been previously
reported [12]. These recombinant proteins
were not toxic to host cell, because the recombinant fused to a fusion partner in
heterologous hosts to neutralize their innate toxicity and increase their expression
levels [48]. From gene expression, inclusion
bodies in the bacterial system seem unavoidable [49]. This study tried to use the pET32a vector with a thioredoxin (Trx)
tag to promote the solubility of protein targets in the cytoplasm of E.
coli and facilitate the formation of disulfide bonds [50] However, the wild-type and mutant
recombinant VesA2 were expressed in inclusion bodies.The recombinant protein from Polybia paulista venom was insoluble.
However, the recombinant showed a 100% pattern of cross reactivity with the native
protein after detection using specific IgEs from patient sera that recognized the
P. paulista venom. These results demonstrated the high degree
of sensitivity and specificity of the IgE antibodies to the hyaluronidase allergen.
The primary structures of both proteins were unchanged, resulting in a similar
secondary structure. This indicates that the venom hyaluronidase may be the primary
factor responsible for triggering allergic symptoms that are caused after accidents
with this wasp [12]. The primary structure of
both proteins has been confirmed by partial amino acid sequence analysis by mass
peptide fingerprinting using LC-MS/MS. These proteins exhibited a significantly high
homology to venom hyaluronidase from other Hymenoptera, such as V.
magnifica, V. tropica and V. affinis
[26].The mutant rVesA2 showed the same percentage of homology to the wild-type because
only two nucleotides had been substituted to form a double point mutation. The
insoluble protein showed activity on a hyaluronidase zymographic gel [34]. The stepwise reduction of the urea
concentration by dialysis was required to recover the enzymatic activity after the
activity was assayed with the hyaluronidase turbidimetric method. However, for the
mutant rVesA2, the substitution of Asp to Asn and Glu to Gln in the mutant
prominently affected the protein activity. The mutant protein completely lost this
activity. Asp107 and Glu109 are theoretically the most important catalytic residues
in the active site of hyaluronidase.Venom hyaluronidases are active in a variety of pH ranges. In 2013, Cavallini et al.
[51] classified the enzymes into two groups. The acid hyaluronidases are active in
the pH range from 2 to 4. The other group, neutral hyaluronidases, are active from
pH 5 to 6 [51]. The enzymes in crude venom
and recombinant wild-type VesA2 tend to be acid hyaluronidases, and they are active
in the most acidic conditions, with a pH less than 4. However, the wild-type protein
from crude venom tolerated a broader pH range. This protein was also active in the
neutral pH, with activity in a range of pH 2 to 7. This range was observed for venom
hyaluronidase from wasps, including the Thai banded wasp (V.
tropica) [27]. In general, the
wasp venom hyaluronidase enzymes exhibit maximal enzymatic activity at pH 5-6 [1]. V. affinis venom still has
hyaluronidase activity at neutral pH (pH about 7). These results demonstrated that
the activity of this wasp venom may act as a spreading factor under normal human
physiological conditions, where the pH is near 7.0, which aids in venom toxin
diffusion into victim tissues [46, 52-55].The enzymatic activity of the recombinant wild-type VesA2 decreased rapidly from pH 2
to 3 and completely lost all activity at pH 4. This indicated that rVesA2 is an
extremely active enzyme at strongly acidic pH. For the wild-type rVesA2, although no
substitutions had been made, the proteins shifted their optimal pH from a neutral to
an acidic pH. Glycosylation has been identified as a factor responsible not only for
increasing protein stability and causing allergenic properties but also for
influencing the catalytic activity, pH optimum and thermal stability of enzymes to
different extents [56, 57]. The recombinant E. coli expression system
is non-glycosylating and is mostly used to obtain the high-yield recombinant protein
that is expressed, which shifts the optimal pH of rVesA2 to an acidic pH. Otherwise,
the activity is decreased at a neutral pH. Therefore, the pH shift to neutral pH or
basic pH may result in the loss of hyaluronidase activity in wild-type rVesA2 [58]. However, the optimal temperature of the
V. affinis venom hyaluronidase was lower than that of other
venom hyaluronidases [1, 35]. These wasps still had 50% hyaluronidase activity at 37-60
°C, which is usually found in other venom hyaluronidases [35, 55].
Conclusion
Hyaluronidase enzymes are interesting since their application is varied.
The enzyme originating from wasp venom was characterized and expressed for further
studies. A recombinant E. coli-based expression system can be used
for up-scale production due to its overexpression capabilities. However, refolding
steps are required for the recovery of the enzyme activity. The rVesA2 wild-type
enzymes showed the highest activities at a strongly acidic pH, whereas those from
crude venom showed high activity at a more neutral pH. The mutant protein, with
double point mutations at the catalytic sites, completely loses the enzymatic
activity. These characterizations could be useful for any variety of
applications.
Authors: José Roberto Aparecido Dos Santos Pinto; Lucilene Delazari Dos Santos; Helen Andrade Arcuri; Nathalia Baptista Dias; Mario Sergio Palma Journal: Protein Pept Lett Date: 2012-06-01 Impact factor: 1.890
Authors: Ling Zhang; Alamelu G Bharadwaj; Andrew Casper; Joel Barkley; Joseph J Barycki; Melanie A Simpson Journal: J Biol Chem Date: 2009-02-06 Impact factor: 5.157