Literature DB >> 31822849

Laboratory diagnosis of disorders of peroxisomal biogenesis and function: a technical standard of the American College of Medical Genetics and Genomics (ACMG).

Irene De Biase1,2, Silvia Tortorelli3, Lisa Kratz4, Steven J Steinberg2, Kristina Cusmano-Ozog5, Nancy Braverman6.   

Abstract

Peroxisomal disorders are a clinically and genetically heterogeneous group of diseases caused by defects in peroxisomal biogenesis or function, usually impairing several metabolic pathways. Peroxisomal disorders are rare; however, the incidence may be underestimated due to the broad spectrum of clinical presentations. The inclusion of X-linked adrenoleukodystrophy to the Recommended Uniform Screening Panel for newborn screening programs in the United States may increase detection of this and other peroxisomal disorders. The current diagnostic approach relies heavily on biochemical genetic tests measuring peroxisomal metabolites, including very long-chain and branched-chain fatty acids in plasma and plasmalogens in red blood cells. Molecular testing can confirm biochemical findings and identify the specific genetic defect, usually utilizing a multiple-gene panel or exome/genome approach. When next-generation sequencing is used as a first-tier test, evaluation of peroxisome metabolism is often necessary to assess the significance of unknown variants and establish the extent of peroxisome dysfunction. This document provides a resource for laboratories developing and implementing clinical biochemical genetic testing for peroxisomal disorders, emphasizing technical considerations for sample collection, test performance, and result interpretation. Additionally, considerations on confirmatory molecular testing are discussed.

Entities:  

Keywords:  X-linked adrenoleukodystrophy; Zellweger spectrum disorders; clinical genetic testing; peroxisomal biogenesis disorders; peroxisome single enzyme/protein defects

Mesh:

Year:  2019        PMID: 31822849     DOI: 10.1038/s41436-019-0713-9

Source DB:  PubMed          Journal:  Genet Med        ISSN: 1098-3600            Impact factor:   8.822


  105 in total

1.  Mutations in the gene encoding peroxisomal alpha-methylacyl-CoA racemase cause adult-onset sensory motor neuropathy.

Authors:  S Ferdinandusse; S Denis; P T Clayton; A Graham; J E Rees; J T Allen; B N McLean; A Y Brown; P Vreken; H R Waterham; R J Wanders
Journal:  Nat Genet       Date:  2000-02       Impact factor: 38.330

2.  Identification of PAHX, a Refsum disease gene.

Authors:  S J Mihalik; J C Morrell; D Kim; K A Sacksteder; P A Watkins; S J Gould
Journal:  Nat Genet       Date:  1997-10       Impact factor: 38.330

3.  ACBD5 deficiency causes a defect in peroxisomal very long-chain fatty acid metabolism.

Authors:  Sacha Ferdinandusse; Kim D Falkenberg; Janet Koster; Petra A Mooyer; Richard Jones; Carlo W T van Roermund; Amy Pizzino; Michael Schrader; Ronald J A Wanders; Adeline Vanderver; Hans R Waterham
Journal:  J Med Genet       Date:  2016-10-31       Impact factor: 6.318

Review 4.  Bile acid analysis in human disorders of bile acid biosynthesis.

Authors:  Frédéric M Vaz; Sacha Ferdinandusse
Journal:  Mol Aspects Med       Date:  2017-03-22

Review 5.  Human disorders of peroxisome metabolism and biogenesis.

Authors:  Hans R Waterham; Sacha Ferdinandusse; Ronald J A Wanders
Journal:  Biochim Biophys Acta       Date:  2015-11-22

6.  Large deletion of the peroxisomal acyl-CoA oxidase gene in pseudoneonatal adrenoleukodystrophy.

Authors:  B Fournier; J M Saudubray; B Benichou; S Lyonnet; A Munnich; H Clevers; B T Poll-The
Journal:  J Clin Invest       Date:  1994-08       Impact factor: 14.808

7.  A novel bile acid biosynthesis defect due to a deficiency of peroxisomal ABCD3.

Authors:  Sacha Ferdinandusse; Gerardo Jimenez-Sanchez; Janet Koster; Simone Denis; Carlo W Van Roermund; Irma Silva-Zolezzi; Ann B Moser; Wouter F Visser; Mine Gulluoglu; Ozlem Durmaz; Mubeccel Demirkol; Hans R Waterham; Gülden Gökcay; Ronald J A Wanders; David Valle
Journal:  Hum Mol Genet       Date:  2014-08-28       Impact factor: 6.150

8.  Putative X-linked adrenoleukodystrophy gene shares unexpected homology with ABC transporters.

Authors:  J Mosser; A M Douar; C O Sarde; P Kioschis; R Feil; H Moser; A M Poustka; J L Mandel; P Aubourg
Journal:  Nature       Date:  1993-02-25       Impact factor: 49.962

9.  Molecular analysis of human acatalasemia. Identification of a splicing mutation.

Authors:  J K Wen; T Osumi; T Hashimoto; M Ogata
Journal:  J Mol Biol       Date:  1990-01-20       Impact factor: 5.469

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  8 in total

1.  Zellweger Syndrome Disorders: From Severe Neonatal Disease to Atypical Adult Presentation.

Authors:  David Cheillan
Journal:  Adv Exp Med Biol       Date:  2020       Impact factor: 2.622

2.  1-O-Alkylglycerol accumulation reveals abnormal ether glycerolipid metabolism in Sjögren-Larsson syndrome.

Authors:  Dana S'aulis; Emily A Khoury; Morgan Zabel; William B Rizzo
Journal:  Mol Genet Metab       Date:  2020-08-12       Impact factor: 4.797

3.  Utility of measuring very long-chain fatty-acyl carnitines in dried blood spots for newborn screening of X-linked Adrenoleukodystrophy.

Authors:  Archana Natarajan; Rita Christopher; Shruti V Palakuzhiyil; Sadanandavalli Retnaswami Chandra
Journal:  Mol Genet Metab Rep       Date:  2021-01-30

4.  Novel DNM1L variants impair mitochondrial dynamics through divergent mechanisms.

Authors:  Kelsey A Nolden; John M Egner; Jack J Collier; Oliver M Russell; Charlotte L Alston; Megan C Harwig; Michael E Widlansky; Souphatta Sasorith; Inês A Barbosa; Andrew Gl Douglas; Julia Baptista; Mark Walker; Deirdre E Donnelly; Andrew A Morris; Hui Jeen Tan; Manju A Kurian; Kathleen Gorman; Santosh Mordekar; Charu Deshpande; Rajib Samanta; Robert McFarland; R Blake Hill; Robert W Taylor; Monika Oláhová
Journal:  Life Sci Alliance       Date:  2022-08-01

5.  An integrated multiomic approach as an excellent tool for the diagnosis of metabolic diseases: our first 3720 patients.

Authors:  Ligia S Almeida; Catarina Pereira; Ruxandra Aanicai; Sabine Schröder; Tomasz Bochinski; Anett Kaune; Alice Urzi; Tania C L S Spohr; Nikenza Viceconte; Sebastian Oppermann; Mohammed Alasel; Saeedeh Ebadat; Sana Iftikhar; Eresha Jasinge; Solaf M Elsayed; Hoda Tomoum; Iman Marzouk; Anil B Jalan; Agne Cerkauskaite; Rimante Cerkauskiene; Tinatin Tkemaladze; Anjum Muhammad Nadeem; Iman Gamal El Din Mahmoud; Fawzia Amer Mossad; Mona Kamel; Laila Abdel Selim; Huma Arshad Cheema; Omid Paknia; Claudia Cozma; Carlos Juaristi-Manrique; Pilar Guatibonza-Moreno; Tobias Böttcher; Florian Vogel; Jorge Pinto-Basto; Aida Bertoli-Avella; Peter Bauer
Journal:  Eur J Hum Genet       Date:  2022-05-25       Impact factor: 5.351

6.  A unique Levey-Jennings control chart used for internal quality control in human papillomavirus detection.

Authors:  Peiyi Peng; Xuehong Peng; Xiaoyang Jiao; Nuan Chen
Journal:  Virol J       Date:  2022-07-28       Impact factor: 5.913

7.  Laboratory analysis of acylcarnitines, 2020 update: a technical standard of the American College of Medical Genetics and Genomics (ACMG).

Authors:  Marcus J Miller; Kristina Cusmano-Ozog; Devin Oglesbee; Sarah Young
Journal:  Genet Med       Date:  2020-10-19       Impact factor: 8.822

8.  A novel use for Levey-Jennings charts in prenatal molecular diagnosis.

Authors:  Binghuan Weng; Ya-Li Xu; Jun Ying; Hao-Kun Yang; Lan Su; Yan-Mei Yang; Min Chen
Journal:  BMC Med Genomics       Date:  2020-07-31       Impact factor: 3.063

  8 in total

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