Literature DB >> 31822480

Genetic Paths to Evolutionary Rescue and the Distribution of Fitness Effects Along Them.

Matthew M Osmond1, Sarah P Otto2, Guillaume Martin3.   

Abstract

The past century has seen substantial theoretical and empirical progress on the genetic basis of adaptation. Over this same period, a pressing need to prevent the evolution of drug resistance has uncovered much about the potential genetic basis of persistence in declining populations. However, we have little theory to predict and generalize how persistence-by sufficiently rapid adaptation-might be realized in this explicitly demographic scenario. Here, we use Fisher's geometric model with absolute fitness to begin a line of theoretical inquiry into the genetic basis of evolutionary rescue, focusing here on asexual populations that adapt through de novo mutations. We show how the dominant genetic path to rescue switches from a single mutation to multiple as mutation rates and the severity of the environmental change increase. In multi-step rescue, intermediate genotypes that themselves go extinct provide a "springboard" to rescue genotypes. Comparing to a scenario where persistence is assured, our approach allows us to quantify how a race between evolution and extinction leads to a genetic basis of adaptation that is composed of fewer loci of larger effect. We hope this work brings awareness to the impact of demography on the genetic basis of adaptation.
Copyright © 2020 by the Genetics Society of America.

Keywords:  Antimicrobial drug resistance; Evolutionary escape; Fisher’s geometric model; Genetic basis of adaptation; Mathematical theory

Mesh:

Year:  2019        PMID: 31822480      PMCID: PMC7017017          DOI: 10.1534/genetics.119.302890

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  56 in total

Review 1.  Evolutionary insight from whole-genome sequencing of experimentally evolved microbes.

Authors:  Jeremy R Dettman; Nicolas Rodrigue; Anita H Melnyk; Alex Wong; Susan F Bailey; Rees Kassen
Journal:  Mol Ecol       Date:  2012-02-14       Impact factor: 6.185

2.  The fitness effect of mutations across environments: a survey in light of fitness landscape models.

Authors:  Guillaume Martin; Thomas Lenormand
Journal:  Evolution       Date:  2006-12       Impact factor: 3.694

3.  Evolutionary rescue in structured populations.

Authors:  Hildegard Uecker; Sarah P Otto; Joachim Hermisson
Journal:  Am Nat       Date:  2013-12-04       Impact factor: 3.926

4.  Proliferation of mutators in A cell population.

Authors:  E F Mao; L Lane; J Lee; J H Miller
Journal:  J Bacteriol       Date:  1997-01       Impact factor: 3.490

5.  The fitness effect of mutations across environments: Fisher's geometrical model with multiple optima.

Authors:  Guillaume Martin; Thomas Lenormand
Journal:  Evolution       Date:  2015-06-10       Impact factor: 3.694

6.  Parallel genetic changes and nonparallel gene-environment interactions characterize the evolution of drug resistance in yeast.

Authors:  Aleeza C Gerstein; Dara S Lo; Sarah P Otto
Journal:  Genetics       Date:  2012-06-19       Impact factor: 4.562

7.  The rate at which asexual populations cross fitness valleys.

Authors:  Daniel B Weissman; Michael M Desai; Daniel S Fisher; Marcus W Feldman
Journal:  Theor Popul Biol       Date:  2009-03-13       Impact factor: 1.570

8.  The probability of evolutionary rescue: towards a quantitative comparison between theory and evolution experiments.

Authors:  Guillaume Martin; Robin Aguilée; Johan Ramsayer; Oliver Kaltz; Ophélie Ronce
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-19       Impact factor: 6.237

9.  The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa.

Authors:  R Craig MacLean; Angus Buckling
Journal:  PLoS Genet       Date:  2009-03-06       Impact factor: 5.917

10.  The evolution of antimicrobial peptide resistance in Pseudomonas aeruginosa is shaped by strong epistatic interactions.

Authors:  Nicholas Jochumsen; Rasmus L Marvig; Søren Damkiær; Rune Lyngklip Jensen; Wilhelm Paulander; Søren Molin; Lars Jelsbak; Anders Folkesson
Journal:  Nat Commun       Date:  2016-10-03       Impact factor: 14.919

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  2 in total

1.  Genetic Signatures of Evolutionary Rescue by a Selective Sweep.

Authors:  Matthew M Osmond; Graham Coop
Journal:  Genetics       Date:  2020-05-12       Impact factor: 4.562

2.  Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages.

Authors:  Andrea Fulgione; Célia Neto; Ahmed F Elfarargi; Emmanuel Tergemina; Shifa Ansari; Mehmet Göktay; Herculano Dinis; Nina Döring; Pádraic J Flood; Sofia Rodriguez-Pacheco; Nora Walden; Marcus A Koch; Fabrice Roux; Joachim Hermisson; Angela M Hancock
Journal:  Nat Commun       Date:  2022-03-18       Impact factor: 17.694

  2 in total

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