Literature DB >> 31821869

Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan.

Raymond Pomponio1, Guray Erus2, Mohamad Habes3, Jimit Doshi2, Dhivya Srinivasan2, Elizabeth Mamourian2, Vishnu Bashyam2, Ilya M Nasrallah4, Theodore D Satterthwaite5, Yong Fan2, Lenore J Launer6, Colin L Masters7, Paul Maruff7, Chuanjun Zhuo8, Henry Völzke9, Sterling C Johnson10, Jurgen Fripp11, Nikolaos Koutsouleris12, Daniel H Wolf5, Raquel Gur13, Ruben Gur13, John Morris14, Marilyn S Albert15, Hans J Grabe16, Susan M Resnick17, R Nick Bryan18, David A Wolk19, Russell T Shinohara20, Haochang Shou21, Christos Davatzikos22.   

Abstract

As medical imaging enters its information era and presents rapidly increasing needs for big data analytics, robust pooling and harmonization of imaging data across diverse cohorts with varying acquisition protocols have become critical. We describe a comprehensive effort that merges and harmonizes a large-scale dataset of 10,477 structural brain MRI scans from participants without a known neurological or psychiatric disorder from 18 different studies that represent geographic diversity. We use this dataset and multi-atlas-based image processing methods to obtain a hierarchical partition of the brain from larger anatomical regions to individual cortical and deep structures and derive age trends of brain structure through the lifespan (3-96 years old). Critically, we present and validate a methodology for harmonizing this pooled dataset in the presence of nonlinear age trends. We provide a web-based visualization interface to generate and present the resulting age trends, enabling future studies of brain structure to compare their data with this reference of brain development and aging, and to examine deviations from ranges, potentially related to disease.
Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Brain; FreeSurfer; MRI; MUSE; ROI; Segmentation

Mesh:

Year:  2019        PMID: 31821869      PMCID: PMC6980790          DOI: 10.1016/j.neuroimage.2019.116450

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  56 in total

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Journal:  Neurobiol Aging       Date:  2009-06-30       Impact factor: 4.673

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Journal:  Biol Psychiatry       Date:  2017-09-20       Impact factor: 12.810

9.  Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank.

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Journal:  Neuroimage       Date:  2017-10-24       Impact factor: 6.556

10.  Structural and functional brain scans from the cross-sectional Southwest University adult lifespan dataset.

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Journal:  Sci Data       Date:  2018-07-17       Impact factor: 6.444

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5.  Embracing the disharmony in medical imaging: A Simple and effective framework for domain adaptation.

Authors:  Rongguang Wang; Pratik Chaudhari; Christos Davatzikos
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6.  Integrating large-scale neuroimaging research datasets: Harmonisation of white matter hyperintensity measurements across Whitehall and UK Biobank datasets.

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7.  Multi-channel attention-fusion neural network for brain age estimation: Accuracy, generality, and interpretation with 16,705 healthy MRIs across lifespan.

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8.  Deep Generative Medical Image Harmonization for Improving Cross-Site Generalization in Deep Learning Predictors.

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