Literature DB >> 31821577

Incorporating human and learned domain knowledge into training deep neural networks: A differentiable dose-volume histogram and adversarial inspired framework for generating Pareto optimal dose distributions in radiation therapy.

Dan Nguyen1, Rafe McBeth1, Azar Sadeghnejad Barkousaraie1, Gyanendra Bohara1, Chenyang Shen1, Xun Jia1, Steve Jiang1.   

Abstract

PURPOSE: We propose a novel domain-specific loss, which is a differentiable loss function based on the dose-volume histogram (DVH), and combine it with an adversarial loss for the training of deep neural networks. In this study, we trained a neural network for generating Pareto optimal dose distributions, and evaluate the effects of the domain-specific loss on the model performance.
METHODS: In this study, three loss functions - mean squared error (MSE) loss, DVH loss, and adversarial (ADV) loss - were used to train and compare four instances of the neural network model: (a) MSE, (b) MSE + ADV, (c) MSE + DVH, and (d) MSE + DVH+ADV. The data for 70 prostate patients, including the planning target volume (PTV), and the organs at risk (OAR) were acquired as 96 × 96 × 24 dimension arrays at 5 mm3 voxel size. The dose influence arrays were calculated for 70 prostate patients, using a 7 equidistant coplanar beam setup. Using a scalarized multicriteria optimization for intensity-modulated radiation therapy, 1200 Pareto surface plans per patient were generated by pseudo-randomizing the PTV and OAR tradeoff weights. With 70 patients, the total number of plans generated was 84 000 plans. We divided the data into 54 training, 6 validation, and 10 testing patients. Each model was trained for a total of 100,000 iterations, with a batch size of 2. All models used the Adam optimizer, with a learning rate of 1 × 10-3 .
RESULTS: Training for 100 000 iterations took 1.5 days (MSE), 3.5 days (MSE+ADV), 2.3 days (MSE+DVH), and 3.8 days (MSE+DVH+ADV). After training, the prediction time of each model is 0.052 s. Quantitatively, the MSE+DVH+ADV model had the lowest prediction error of 0.038 (conformation), 0.026 (homogeneity), 0.298 (R50), 1.65% (D95), 2.14% (D98), and 2.43% (D99). The MSE model had the worst prediction error of 0.134 (conformation), 0.041 (homogeneity), 0.520 (R50), 3.91% (D95), 4.33% (D98), and 4.60% (D99). For both the mean dose PTV error and the max dose PTV, Body, Bladder and rectum error, the MSE+DVH+ADV outperformed all other models. Regardless of model, all predictions have an average mean and max dose error <2.8% and 4.2%, respectively.
CONCLUSION: The MSE+DVH+ADV model performed the best in these categories, illustrating the importance of both human and learned domain knowledge. Expert human domain-specific knowledge can be the largest driver in the performance improvement, and adversarial learning can be used to further capture nuanced attributes in the data. The real-time prediction capabilities allow for a physician to quickly navigate the tradeoff space for a patient, and produce a dose distribution as a tangible endpoint for the dosimetrist to use for planning. This is expected to considerably reduce the treatment planning time, allowing for clinicians to focus their efforts on the difficult and demanding cases.
© 2019 American Association of Physicists in Medicine.

Entities:  

Keywords:  adversarial networks; deep learning; domain knowledge; dose volume histogram; intensity modulated radiation therapy; pareto optimality

Mesh:

Year:  2019        PMID: 31821577     DOI: 10.1002/mp.13955

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  13 in total

1.  Using deep learning to predict beam-tunable Pareto optimal dose distribution for intensity-modulated radiation therapy.

Authors:  Gyanendra Bohara; Azar Sadeghnejad Barkousaraie; Steve Jiang; Dan Nguyen
Journal:  Med Phys       Date:  2020-08-02       Impact factor: 4.071

2.  Artificial Intelligence in Radiation Therapy.

Authors:  Yabo Fu; Hao Zhang; Eric D Morris; Carri K Glide-Hurst; Suraj Pai; Alberto Traverso; Leonard Wee; Ibrahim Hadzic; Per-Ivar Lønne; Chenyang Shen; Tian Liu; Xiaofeng Yang
Journal:  IEEE Trans Radiat Plasma Med Sci       Date:  2021-08-24

3.  Domain knowledge driven 3D dose prediction using moment-based loss function.

Authors:  Gourav Jhanwar; Navdeep Dahiya; Parmida Ghahremani; Masoud Zarepisheh; Saad Nadeem
Journal:  Phys Med Biol       Date:  2022-09-14       Impact factor: 4.174

Review 4.  A Survey on Deep Learning for Precision Oncology.

Authors:  Ching-Wei Wang; Muhammad-Adil Khalil; Nabila Puspita Firdi
Journal:  Diagnostics (Basel)       Date:  2022-06-17

5.  Modeling physician's preference in treatment plan approval of stereotactic body radiation therapy of prostate cancer.

Authors:  Yin Gao; Chenyang Shen; Yesenia Gonzalez; Xun Jia
Journal:  Phys Med Biol       Date:  2022-05-26       Impact factor: 4.174

Review 6.  Artificial intelligence and machine learning for medical imaging: A technology review.

Authors:  Ana Barragán-Montero; Umair Javaid; Gilmer Valdés; Dan Nguyen; Paul Desbordes; Benoit Macq; Siri Willems; Liesbeth Vandewinckele; Mats Holmström; Fredrik Löfman; Steven Michiels; Kevin Souris; Edmond Sterpin; John A Lee
Journal:  Phys Med       Date:  2021-05-09       Impact factor: 2.685

7.  A comparison of Monte Carlo dropout and bootstrap aggregation on the performance and uncertainty estimation in radiation therapy dose prediction with deep learning neural networks.

Authors:  Dan Nguyen; Azar Sadeghnejad Barkousaraie; Gyanendra Bohara; Anjali Balagopal; Rafe McBeth; Mu-Han Lin; Steve Jiang
Journal:  Phys Med Biol       Date:  2021-02-24       Impact factor: 3.609

8.  Improving efficiency of training a virtual treatment planner network via knowledge-guided deep reinforcement learning for intelligent automatic treatment planning of radiotherapy.

Authors:  Chenyang Shen; Liyuan Chen; Yesenia Gonzalez; Xun Jia
Journal:  Med Phys       Date:  2021-02-16       Impact factor: 4.071

9.  A hierarchical deep reinforcement learning framework for intelligent automatic treatment planning of prostate cancer intensity modulated radiation therapy.

Authors:  Chenyang Shen; Liyuan Chen; Xun Jia
Journal:  Phys Med Biol       Date:  2021-06-23       Impact factor: 3.609

10.  A feasibility study on deep learning-based individualized 3D dose distribution prediction.

Authors:  Jianhui Ma; Dan Nguyen; Ti Bai; Michael Folkerts; Xun Jia; Weiguo Lu; Linghong Zhou; Steve Jiang
Journal:  Med Phys       Date:  2021-07-11       Impact factor: 4.506

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