| Literature DB >> 31817903 |
Cecilia Garcia-Oliva1, Pilar Hoyos1, Lucie Petrásková2, Natalia Kulik3, Helena Pelantová2, Alfredo H Cabanillas4, Ángel Rumbero4, Vladimír Křen2, María J Hernáiz1, Pavla Bojarová2,5.
Abstract
Fungal β-N-acetylhexosaminidases, though hydrolytic enzymes in vivo, are useful tools in the preparation of oligosaccharides of biological interest. The β-N-acetylhexosaminidase from Talaromyces flavus is remarkable in terms of its synthetic potential, broad substrate specificity, and tolerance to substrate modifications. It can be heterologously produced in Pichia pastoris in a high yield. The mutation of the Tyr470 residue to histidine greatly enhances its transglycosylation capability. The aim of this work was to identify the structural requirements of this model β-N-acetylhexosaminidase for its transglycosylation acceptors and formulate a structure-activity relationship study. Enzymatic reactions were performed using an activated glycosyl donor, 4-nitrophenyl N-acetyl-β-d-glucosaminide or 4-nitrophenyl N-acetyl-β-d-galactosaminide, and a panel of glycosyl acceptors of varying structural features (N-acetylglucosamine, glucose, N-acetylgalactosamine, galactose, N-acetylmuramic acid, and glucuronic acid). The transglycosylation products were isolated and structurally characterized. The C-2 N-acetamido group in the acceptor molecule was found to be essential for recognition by the enzyme. The presence of the C-2 hydroxyl moiety strongly hindered the normal course of transglycosylation, yielding unique non-reducing disaccharides in a low yield. Moreover, whereas the gluco-configuration at C-4 steered the glycosylation into the β(1-4) position, the galacto-acceptor afforded a β(1-6) glycosidic linkage. The Y470H mutant enzyme was tested with acceptors based on β-glycosides of uronic acid and N-acetylmuramic acid. With the latter acceptor, we were able to isolate and characterize one glycosylation product in a low yield. To our knowledge, this is the first example of enzymatic glycosylation of an N-acetylmuramic acid derivative. In order to explain these findings and predict enzyme behavior, a modeling study was accomplished that correlated with the acquired experimental data.Entities:
Keywords: Glide docking; Talaromyces flavus; muramic acid; non-reducing carbohydrate; substrate specificity; transglycosylation; β-N-acetylhexosaminidases
Mesh:
Substances:
Year: 2019 PMID: 31817903 PMCID: PMC6940953 DOI: 10.3390/ijms20246181
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Selection of acceptors screened with the wild-type enzyme (TfHex WT). (A) Acceptors based on the gluco-configuration: N-acetylglucosamine (1), glucose (2), N-acetylmuramic acid (3), and glucuronic acid (4); (B) acceptors based on the galacto-configuration: galactose (6) and N-acetylgalactosamine (5).
Preparative transglycosylation reactions with TfHex WT and Y470H.
| Entry | Enzyme | Donor | Acceptor | Donor/Acceptor [mM] 1 | Product | Yield |
|---|---|---|---|---|---|---|
|
| WT | GlcNAc | 50/300 | GlcNAc-β(1-4)-GlcNAc | 24% | |
|
| WT | GalNAc | 50/300 | GalNAc- β (1-6)-GalNAc | 31% | |
|
| WT | Glc | 50/300 | GlcNAc- β (1-1)-Glc | 14% | |
|
| WT | Gal | 50/300 | GlcNAc- β (1-1)-Gal | 10% | |
|
| Y470H | MurNAc | 50 (x2)/100 | GlcNAc- β (1-X)-MurNAc | n.q. 1 | |
|
| Y470H | MurNAc- | 50/100 | GalNAc- β (1-6)-MurNAc- | ≈1% |
1 Not quantified. The product could not be isolated in a sufficient purity for NMR characterization.
Figure 2Products of the glycosylation of GlcNAc (1), GalNAc (5), glucose (2), and galactose (6) catalyzed by TfHex WT.
Figure 3Series of β-glycosides of GlcA (11a–15a) and MurNAc (11b–15b) modified at the anomeric position.
Figure 4Disaccharide 16 synthesized by the transglycosylation of MurA glycoside (MurNAc-OPr) 13b with GalNAc under the catalysis by TfHex Y470H.
Scaled binding scores of docked transglycosylation acceptors (kcal/mol). The orientation of site 1 and site 2 is described in the text.
| Acceptor | Position of Respective Acceptor Hydroxyl close to Catalytic Glu371 | ||||||
|---|---|---|---|---|---|---|---|
| None (Site 1) | None (Site 2) | C-1 | C-2 | C-3 | C-4 | C-6 | |
|
| |||||||
| GlcNAc ( | n.b.1/ | −2.28/n.b. | n.b./n.b. | n.b./n.b. | −2.37/n.b. | −2.29/−2.09 | |
| Glc ( |
| n.b./n.b. | -2.14/n.b. | −4.44/n.b. | −4.70/n.b. | −2.27/n.b. | |
| MurNAc ( | n.b./ | n.b./n.b. | n.b./n.b. | n.b./n.b. | n.b./n.b. | −3.66/n.b. | |
| GlcA ( |
| −2.31/−2.60 | n.b./n.b. | -2.03/n.b. | n.b./n.b. | −2.221/n.b. | n.b./n.b. |
| GalNAc ( |
| −2.65/n.b. | n.b./n.b. | n.b./n.b. | −4.03/−2.28 | n.b./n.b. | n.b./− |
| Gal ( | −2.57/ | −2.36/n.b. | n.b./n.b. | n.b./n.b. | n.b./n.b. | ||
| MurNAc- | −2.42/ | n.b./n.b. | n.b./n.b. | n.b./n.b. | n.b./n.b. | −4.12/−2.93 | |
|
| |||||||
| GlcA ( | −5.45/3.80 | n.b./ | n.b./n.b. | n.b./n.b. | n.b./n.b. | n.b./n.b. | n.b./n.b. |
| MurNAc ( | n.b./n.b. | n.b./n.b. | n.b./n.b. | n.b./n.b. | n.b./n.b. | n.b./−2.69 | |
| MurNAc- | −2.96/−3.19 | n.b./n.b. | n.b./n.b. | n.b./n.b. | n.b./n.b. | n.b./− | |
1 n.b. stands for not bound. Two most favorable binding scores for each complex are indicated in red; the scores corresponding to bonds confirmed by the synthetic experiment are underlined.
Figure 5Interaction of glucose and galactose docked in the WT-GlcNAcox complex after 10 ns of molecular dynamics. Hydrogen bonds (HB) are shown by yellow dashed lines. Acceptor atoms docked close to Glu371 at the beginning of the molecular dynamics simulation are represented by a ball. (A) Snapshot of the WT-GlcNAcox complex with galactose docked with C-1 close to Glu371, and the distance between O-1 of Gal and the OE2 atom of Glu371 in (red) or C-1 of GlcNAcox (blue). The respective distances are indicated in the models in respective colors. (B) Snapshot of the WT-GlcNAcox complex with galactose docked with C-3 close to Glu371 and the distance between O-3 of Gal and the OE2 atom of Glu371 (red) or C-1 of GlcNAcox (blue). The respective distances are indicated in the models in respective colors. (C) Snapshot of the WT-GlcNAcox complex with glucose docked with C-1 close to Glu 371, and the distance between C-1 of GlcNAcox (blue) or the OE2 atom of Glu371 (red) and O-1 of glucose. The respective distances are indicated in the models in respective colors. (D) Snapshot of the WT-GlcNAcox complex with glucose docked with C-3 close to Glu371, and the distance between C-1 of GlcNAcox (blue) or the OE1 atom of Glu371 (red), and O-3 of glucose. The respective distances are indicated in the models in respective colors.
Figure 6Steric conflict in the formation of the transglycosylation product with the β(1-3) glycosidic bond. (A). Overlay of docked orientations of GlcNAc (blue) and GalNAc (yellow) acceptors with C-3 or C-4 (GlcNAc in magenta) close to Glu371 in the WT-GlcNAcox complex. Active site residues within 3 Å from the GalNAc N-acetyl group are shown. (A) change that would be required in the C-3 position for product formation is indicated by the red dotted arrow. (B) Expected orientation of the GalNAc acceptor needed for the formation of GalNAc-β(1-3)-GlcNAc in the active site of WT-GlcNAcox. Position of the acceptor is determined from the alignment with N,N′-diacetylchitobiose (PDB ID: 1qbb). Intersection of the molecular surfaces of GalNAc (yellow) and Trp444 (cyan) shows that the GalNAc acceptor cannot move closer to the transglycosylation donor for the product formation due to steric hindrance.
Figure 7(A) Orientation of MurNAc in the WT-GlcNAcox complex: green—close to the transglycosylation donor; element color—far, corresponds to site 2. The respective Glide absolute binding scores are shown in the figure. GlcNAcox is shown in magenta, hydrogens are hidden, and the C-6 atom is represented by a ball. (B) Electrostatic potential surface of the WT enzyme active site with GlcNAcox (magenta) and the MurNAc acceptor (element color). Orientation of Glu332 (yellow) in one of the analyzed snapshots disallows a close interaction between the acceptor and donor. The negatively charged environment is shown in red, and that which is positively charged is presented in blue. (C) Residues with a negative charge in the vicinity of the MurNAc acceptor carboxyl group when it binds close to the transglycosylation donor. (D) Overlay of the aglycone binding site residues of WT-GlcNAcox (green) and Y470H-GalNAcox (magenta) with docked MurNAc-OPr. Residues with similar side chain orientations are hidden.