| Literature DB >> 31814146 |
Eric S Kawaguchi1, Marc A Suchard1,2,3, Zhenqiu Liu4, Gang Li1,2.
Abstract
Sparse high-dimensional massive sample size (sHDMSS) time-to-event data present multiple challenges to quantitative researchers as most current sparse survival regression methods and software will grind to a halt and become practically inoperable. This paper develops a scalable ℓ0 -based sparse Cox regression tool for right-censored time-to-event data that easily takes advantage of existing high performance implementation of ℓ2 -penalized regression method for sHDMSS time-to-event data. Specifically, we extend the ℓ0 -based broken adaptive ridge (BAR) methodology to the Cox model, which involves repeatedly performing reweighted ℓ2 -penalized regression. We rigorously show that the resulting estimator for the Cox model is selection consistent, oracle for parameter estimation, and has a grouping property for highly correlated covariates. Furthermore, we implement our BAR method in an R package for sHDMSS time-to-event data by leveraging existing efficient algorithms for massive ℓ2 -penalized Cox regression. We evaluate the BAR Cox regression method by extensive simulations and illustrate its application on an sHDMSS time-to-event data from the National Trauma Data Bank with hundreds of thousands of observations and tens of thousands sparsely represented covariates.Entities:
Keywords: Censoring; high-dimensional covariates; massive sample size; penalized regression; proportional hazards; survival analysis
Mesh:
Year: 2019 PMID: 31814146 PMCID: PMC8386178 DOI: 10.1002/sim.8438
Source DB: PubMed Journal: Stat Med ISSN: 0277-6715 Impact factor: 2.497