| Literature DB >> 31807652 |
Adel H M Ibrahim1, Nikolaos Tzanidakis2, Smaragda Sotiraki2, Huitong Zhou3, Jonathan G H Hickford3.
Abstract
The aim of this study was to estimate the effect of variation in the fatty acid binding protein 4 gene (FABP4) on milk production traits in Greek Sfakia sheep. Polymerase chain reaction - single-stranded conformational polymorphism (PCR-SSCP) analysis was used to genotype a total of 374 Sfakia ewes for two regions of FABP4 located around exon 2-intron 2 (Region 1) and exon 3-intron 3 (Region 2). Each month, for a period of 6 months, milk samples were collected from the ewes to measure total milk yield, fat content, protein content, lactose content, non-fat solid content, pH, and somatic cell count (SCC). A general linear model was used to test the association between the variation observed in FABP4 and milk production traits. Four gene variants (A1-A4) were found in Region 1 and two variants (C1-C2) were found in Region 2. In the first region, the FABP4 genotype significantly affected ( P < 0.05 ) non-fat solid levels, fat content, and SCC. The presence of the A2 variant was significantly associated ( P < 0.05 ) with decreased SCC, while the presence of A4 was significantly associated with decreased milk yield ( P < 0.01 ), increased non-fat solid content ( P < 0.05 ), decreased fat content ( P < 0.01 ), increased lactose content ( P < 0.05 ), and increased pH ( P < 0.05 ). In the second region, FABP4 genotype had an effect ( P < 0.05 ) on protein content and the presence of the C2 variant was associated ( P < 0.05 ) with increased protein content, decreased SCC, and lower pH. The results suggest an association between variation in ovine FABP4 and milk production traits in Greek Sfakia sheep. Nevertheless, further analyses in independent sheep populations of increased size will strengthen these findings. Copyright:Entities:
Year: 2019 PMID: 31807652 PMCID: PMC6852875 DOI: 10.5194/aab-62-413-2019
Source DB: PubMed Journal: Arch Anim Breed ISSN: 0003-9438
List of primer sequences used for PCR.
| Region amplified | Size (bp) | Primer sequence | Reference |
|---|---|---|---|
| Region 1 | 350 | F: CAGGAATTTGATGAAGTCACT | Yan et al. (2012) |
| (exon 2–intron 2) | | R: GTAACATGGTTCAGAGCTAG | |
| Region 2 | 524 | F: GATGGGAAATCAACCACCA | Yan et al. (2012) |
| (exon 3–intron 3) | R: TCTCCTTCAATGCTGAGAAG |
F forward; R reverse.
Sequence variation in the two regions of ovine FABP4.
| Position | Nucleotide sequence | ||||
|---|---|---|---|---|---|
| Region 1 | c.246 | C | – | C | C |
| c.246 | G | A | A | A | |
| c.246 | C | C | C | T | |
| | c.246 | G | G | G | G |
| Position | Nucleotide sequence | ||||
| | | ||||
| Region 2 | c.348 | T | C | ||
| c.348 | T | C | |||
Least square means and their standard error (SE) for milk production traits in Greek Sfakia ewes according to the FABP4 genotypes.
| Genotype | Milk yield | Non-fat solids | Protein | Fat | Lactose | pH | SCC | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| | (mg per 100 mL) | (mg per 100 mL) | (mg per 100 mL) | (mg per 100 mL) | | (log) | |||||||||
| Estimate | SE | Estimate | SE | Estimate | SE | Estimate | SE | Estimate | SE | Estimate | SE | Estimate | SE | ||
| Region 1 | |||||||||||||||
| 68 | 561 | 14 | 10.81 | 0.08 | 5.36 | 0.06 | 5.07 | 0.11 | 4.59 | 0.06 | 6.79 | 0.02 | 5.29 | 0.06 | |
| 125 | 587 | 10 | 10.77 | 0.06 | 5.29 | 0.04 | 5.21 | 0.08 | 4.66 | 0.04 | 6.78 | 0.01 | 5.16 | 0.04 | |
| 57 | 576 | 16 | 10.74 | 0.09 | 5.32 | 0.07 | 5.03 | 0.12 | 4.60 | 0.07 | 6.81 | 0.02 | 5.36 | 0.07 | |
| 25 | 553 | 24 | 10.98 | 0.19 | 5.29 | 0.12 | 5.01 | 0.17 | 4.58 | 0.09 | 6.82 | 0.03 | 5.15 | 0.10 | |
| 63 | 596 | 16 | 10.91 | 0.09 | 5.37 | 0.06 | 5.22 | 0.11 | 4.71 | 0.06 | 6.79 | 0.02 | 5.16 | 0.06 | |
| 35 | 609 | 20 | 10.65 | 0.16 | 5.19 | 0.08 | 5.32 | 0.15 | 4.64 | 0.08 | 6.77 | 0.02 | 5.27 | 0.08 | |
| | 0.015 | 0.369 | 0.047 | 0.549 | 0.923 | 0.021 | |||||||||
| Region 2 | |||||||||||||||
| 210 | 584 | 8 | 10.84 | 0.05 | 5.25 | 0.03 | 5.17 | 0.06 | 4.65 | 0.03 | 6.78 | 0.01 | 5.15 | 0.03 | |
| 159 | 577 | 9 | 10.70 | 0.05 | 5.36 | 0.04 | 5.11 | 0.07 | 4.62 | 0.04 | 6.80 | 0.01 | 5.28 | 0.04 | |
| 25 | 598 | 23 | 10.78 | 0.14 | 5.41 | 0.10 | 5.28 | 0.17 | 4.53 | 0.10 | 6.80 | 0.03 | 5.30 | 0.10 | |
| 0.262 | 0.196 | 0.039 | 0.263 | 0.994 | 0.355 | ||||||||||
SCC: somatic cell count. SE: standard error. Means within a column that do not share a superscript letter are significantly () different. Means followed by different letter(s) within a column are significantly different () according to Duncan's adjustment for pairwise comparisons. Means not followed by letter(s) within a column are not significantly different () according to Duncan's adjustment for pairwise comparisons.
Least square means and their standard errors for milk production traits in Greek Sfakia ewes according to the presence/absence of FABP4 variants.
| Variant | Milk yield | Non-fat solids | Protein | Fat | Lactose | pH | SCC | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| | (mg per 100 mL) | (mg per 100 mL) | (mg per 100 mL) | (mg per 100 mL) | | (log) | ||||||||||
| Estimate | SE | Estimate | SE | Estimate | SE | Estimate | SE | Estimate | SE | Estimate | SE | Estimate | SE | |||
| Region 1 | ||||||||||||||||
| Absent | 114 | 594 | 10 | 10.60 | 0.06 | 5.34 | 0.04 | 5.20 | 0.08 | 4.63 | 0.04 | 6.79 | 0.01 | 5.20 | 0.04 | |
| Present | 259 | 577 | 7 | 10.58 | 0.03 | 5.31 | 0.03 | 5.13 | 0.05 | 4.64 | 0.03 | 6.79 | 0.01 | 5.22 | 0.03 | |
| Absent | 148 | 569 | 9 | 10.62 | 0.05 | 5.33 | 0.04 | 5.07 | 0.07 | 4.63 | 0.04 | 6.79 | 0.01 | 5.24 | 0.04 | |
| Present | 225 | 591 | 7 | 10.56 | 0.04 | 5.31 | 0.03 | 5.21 | 0.05 | 4.64 | 0.03 | 6.79 | 0.01 | 5.19* | 0.03 | |
| Absent | 282 | 580 | 7 | 10.58 | 0.03 | 5.33 | 0.03 | 5.16 | 0.05 | 4.63 | 0.03 | 6.79 | 0.01 | 5.19 | 0.03 | |
| Present | 91 | 589 | 12 | 10.60 | 0.06 | 5.28 | 0.05 | 5.12 | 0.09 | 4.63 | 0.05 | 6.78 | 0.01 | 5.27 | 0.05 | |
| Absent | 330 | 584 | 6 | 10.57 | 0.03 | 5.31 | 0.03 | 5.17 | 0.04 | 4.56 | 0.03 | 6.79 | 0.01 | 5.22 | 0.03 | |
| | Present | 43 | 570** | 18 | 10.72* | 0.10 | 5.37 | 0.08 | 5.00** | 0.13 | 4.64* | 0.08 | 6.80* | 0.02 | 5.14 | 0.08 |
| Region 2 | ||||||||||||||||
| Absent | 23 | 599 | 23 | 10.79 | 0.14 | 5.42 | 0.10 | 5.29 | 0.17 | 4.53 | 0.10 | 6.67 | 0.02 | 5.29 | 0.10 | |
| Present | 350 | 581 | 6 | 10.78 | 0.03 | 5.31 | 0.02 | 5.14 | 0.04 | 4.64 | 0.02 | 6.68 | 0.01 | 5.21 | 0.03 | |
| Absent | 196 | 586 | 8 | 10.84 | 0.05 | 5.25 | 0.03 | 5.13 | 0.06 | 4.61 | 0.04 | 6.69 | 0.01 | 5.27 | 0.04 | |
| Present | 177 | 578 | 9 | 10.72 | 0.05 | 5.36* | 0.04 | 5.17 | 0.06 | 4.65 | 0.03 | 6.67* | 0.01 | 5.14 | 0.03* | |
refers to significance at (); refers to significance at (); SCC: somatic cell count; SE: standard error.