Literature DB >> 31805762

A General Mechanism for Signal Propagation in the Nicotinic Acetylcholine Receptor Family.

Ana Sofia F Oliveira1,2, Christopher J Edsall3, Christopher J Woods2,3, Phil Bates4,5, Gerardo Viedma Nunez5, Susan Wonnacott6, Isabel Bermudez7, Giovanni Ciccotti8,9,10, Timothy Gallagher2, Richard B Sessions1, Adrian J Mulholland2.   

Abstract

Nicotinic acetylcholine receptors (nAChRs) modulate synaptic activity in the central nervous system. The α7 subtype, in particular, has attracted considerable interest in drug discovery as a target for several conditions, including Alzheimer's disease and schizophrenia. Identifying agonist-induced structural changes underlying nAChR activation is fundamentally important for understanding biological function and rational drug design. Here, extensive equilibrium and nonequilibrium molecular dynamics simulations, enabled by cloud-based high-performance computing, reveal the molecular mechanism by which structural changes induced by agonist unbinding are transmitted within the human α7 nAChR. The simulations reveal the sequence of coupled structural changes involved in driving conformational change responsible for biological function. Comparison with simulations of the α4β2 nAChR subtype identifies features of the dynamical architecture common to both receptors, suggesting a general structural mechanism for signal propagation in this important family of receptors.

Entities:  

Year:  2019        PMID: 31805762     DOI: 10.1021/jacs.9b09055

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Biomolecular Modeling and Simulation: A Prospering Multidisciplinary Field.

Authors:  Tamar Schlick; Stephanie Portillo-Ledesma; Christopher G Myers; Lauren Beljak; Justin Chen; Sami Dakhel; Daniel Darling; Sayak Ghosh; Joseph Hall; Mikaeel Jan; Emily Liang; Sera Saju; Mackenzie Vohr; Chris Wu; Yifan Xu; Eva Xue
Journal:  Annu Rev Biophys       Date:  2021-02-19       Impact factor: 12.981

2.  A potential interaction between the SARS-CoV-2 spike protein and nicotinic acetylcholine receptors.

Authors:  A Sofia F Oliveira; Amaurys Avila Ibarra; Isabel Bermudez; Lorenzo Casalino; Zied Gaieb; Deborah K Shoemark; Timothy Gallagher; Richard B Sessions; Rommie E Amaro; Adrian J Mulholland
Journal:  Biophys J       Date:  2021-02-18       Impact factor: 4.033

3.  Molecular Simulations of Hydrophobic Gating of Pentameric Ligand Gated Ion Channels: Insights into Water and Ions.

Authors:  Shanlin Rao; Gianni Klesse; Charlotte I Lynch; Stephen J Tucker; Mark S P Sansom
Journal:  J Phys Chem B       Date:  2021-01-13       Impact factor: 2.991

4.  Allosteric communication in class A β-lactamases occurs via cooperative coupling of loop dynamics.

Authors:  Ioannis Galdadas; Shen Qu; Ana Sofia F Oliveira; Edgar Olehnovics; Andrew R Mack; Maria F Mojica; Pratul K Agarwal; Catherine L Tooke; Francesco Luigi Gervasio; James Spencer; Robert A Bonomo; Adrian J Mulholland; Shozeb Haider
Journal:  Elife       Date:  2021-03-23       Impact factor: 8.140

5.  #COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol.

Authors:  Abigail Dommer; Lorenzo Casalino; Fiona Kearns; Mia Rosenfeld; Nicholas Wauer; Surl-Hee Ahn; John Russo; Sofia Oliveira; Clare Morris; Anthony Bogetti; Anda Trifan; Alexander Brace; Terra Sztain; Austin Clyde; Heng Ma; Chakra Chennubhotla; Hyungro Lee; Matteo Turilli; Syma Khalid; Teresa Tamayo-Mendoza; Matthew Welborn; Anders Christensen; Daniel G A Smith; Zhuoran Qiao; Sai Krishna Sirumalla; Michael O'Connor; Frederick Manby; Anima Anandkumar; David Hardy; James Phillips; Abraham Stern; Josh Romero; David Clark; Mitchell Dorrell; Tom Maiden; Lei Huang; John McCalpin; Christopher Woods; Alan Gray; Matt Williams; Bryan Barker; Harinda Rajapaksha; Richard Pitts; Tom Gibbs; John Stone; Daniel Zuckerman; Adrian Mulholland; Thomas Miller; Shantenu Jha; Arvind Ramanathan; Lillian Chong; Rommie Amaro
Journal:  bioRxiv       Date:  2021-11-15

6.  Induced Polarization in Molecular Dynamics Simulations of the 5-HT3 Receptor Channel.

Authors:  Gianni Klesse; Shanlin Rao; Stephen J Tucker; Mark S P Sansom
Journal:  J Am Chem Soc       Date:  2020-05-08       Impact factor: 15.419

Review 7.  Dynamical nonequilibrium molecular dynamics reveals the structural basis for allostery and signal propagation in biomolecular systems.

Authors:  A Sofia F Oliveira; Giovanni Ciccotti; Shozeb Haider; Adrian J Mulholland
Journal:  Eur Phys J B       Date:  2021-07-20       Impact factor: 1.500

  7 in total

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