Literature DB >> 31804749

Second-Coordination Sphere Effects on Selectivity and Specificity of Heme and Nonheme Iron Enzymes.

Sam P de Visser1.   

Abstract

Mononuclear iron-containing enzymes are highly versatile oxidants that often react stereospecifically and/or regioselectively with substrates. Combined experimental and computational studies on heme monooxygenases, nonheme iron dioxygenases and halogenases have revealed the intricate details of the second-coordination sphere, which determine this specificity and selectivity. These second-coordination sphere effects originate from the positioning of the substrate and oxidant, which involve the binding of the co-factors and substrate into the active site of the protein. In addition, some enzymes affect the selectivity and reactivity through charge-stabilization from nearby bound cations/anions, an induced electric field or through the positioning of salt bridges and hydrogen-bonding interactions to first-coordination sphere iron ligands and/or the substrate. Examples of all of these second-coordination sphere effects in iron-containing enzymes and how these influence structure and reactivity are given.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  computational modeling; cytochrome P450; enzyme mechanisms; hydroxylation; nonheme iron dioxygenases

Year:  2019        PMID: 31804749     DOI: 10.1002/chem.201905119

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  6 in total

1.  Charge Maintenance during Catalysis in Nonheme Iron Oxygenases.

Authors:  Ephrahime S Traore; Aimin Liu
Journal:  ACS Catal       Date:  2022-05-10       Impact factor: 13.700

2.  Bioengineering of Cytochrome P450 OleTJE: How Does Substrate Positioning Affect the Product Distributions?

Authors:  Fabián G Cantú Reinhard; Yen-Ting Lin; Agnieszka Stańczak; Sam P de Visser
Journal:  Molecules       Date:  2020-06-09       Impact factor: 4.411

3.  Lignin Biodegradation by a Cytochrome P450 Enzyme: A Computational Study into Syringol Activation by GcoA.

Authors:  Hafiz Saqib Ali; Richard H Henchman; Sam P de Visser
Journal:  Chemistry       Date:  2020-09-16       Impact factor: 5.236

4.  Second Coordination Sphere Effects on the Mechanistic Pathways for Dioxygen Activation by a Ferritin: Involvement of a Tyr Radical and the Identification of a Cation Binding Site.

Authors:  Chieh-Chih George Yeh; Thirakorn Mokkawes; Justin M Bradley; Nick E Le Brun; Sam P de Visser
Journal:  Chembiochem       Date:  2022-05-23       Impact factor: 3.461

5.  Can Second Coordination Sphere and Long-Range Interactions Modulate Hydrogen Atom Transfer in a Non-Heme Fe(II)-Dependent Histone Demethylase?

Authors:  Shobhit S Chaturvedi; Simahudeen Bathir Jaber Sathik Rifayee; Sodiq O Waheed; Jon Wildey; Cait Warner; Christopher J Schofield; Tatyana G Karabencheva-Christova; Christo Z Christov
Journal:  JACS Au       Date:  2022-08-18

6.  How Does Replacement of the Axial Histidine Ligand in Cytochrome c Peroxidase by Nδ-Methyl Histidine Affect Its Properties and Functions? A Computational Study.

Authors:  Calvin W Z Lee; M Qadri E Mubarak; Anthony P Green; Sam P de Visser
Journal:  Int J Mol Sci       Date:  2020-09-27       Impact factor: 5.923

  6 in total

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