Literature DB >> 31803989

Computational Investigations of the Chemical Mechanism of the Enzyme Nitrogenase.

Ian Dance1.   

Abstract

The chemical mechanism of nitrogenase, catalysing N2 +8 e+8 H+ →2 NH3 +H2 , occurs at a large multi-metal cluster (FeMo-co) with composition CFe7 MoS9 (homocitrate). More than 20 steps are required. Experimental elucidation of this mechanism is elusive, for various reasons, and computational approaches have a valuable role. This review critically surveys recent density functional calculations of the coordination chemistry and relevant reactions of FeMo-co within the protein surrounds. Topics covered include the accuracies and validation of the density functionals, the treatment of electronic structure, and the chemical models used. The components of mechanism are described, including the input of N2 , proton supply, the egress of NH3 , and the roles of surrounding protein. This leads to descriptions and evaluations of the overall mechanistic cycles proposed on the basis of density functional calculations. Finally, I discuss some current issues, and consider the outlook for further work.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  cluster compounds; coordination chemistry; density functional calculations; mechanisms; nitrogen fixation

Mesh:

Substances:

Year:  2020        PMID: 31803989     DOI: 10.1002/cbic.201900636

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  5 in total

1.  Special Issue on Nitrogenases and Homologous Systems.

Authors:  Yilin Hu; Markus W Ribbe
Journal:  Chembiochem       Date:  2020-05-19       Impact factor: 3.164

Review 2.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

3.  Large Hydrogen Isotope Fractionation Distinguishes Nitrogenase-Derived Methane from Other Methane Sources.

Authors:  Katja E Luxem; William D Leavitt; Xinning Zhang
Journal:  Appl Environ Microbiol       Date:  2020-09-17       Impact factor: 4.792

4.  Thermodynamically Favourable States in the Reaction of Nitrogenase without Dissociation of any Sulfide Ligand.

Authors:  Hao Jiang; Ulf Ryde
Journal:  Chemistry       Date:  2022-02-02       Impact factor: 5.020

5.  Does the crystal structure of vanadium nitrogenase contain a reaction intermediate? Evidence from quantum refinement.

Authors:  Lili Cao; Octav Caldararu; Ulf Ryde
Journal:  J Biol Inorg Chem       Date:  2020-08-27       Impact factor: 3.358

  5 in total

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