Literature DB >> 31803907

Controlling cell-to-cell variability with synthetic gene circuits.

Asli Azizoglu1, Jörg Stelling1.   

Abstract

Cell-to-cell variability originating, for example, from the intrinsic stochasticity of gene expression, presents challenges for designing synthetic gene circuits that perform robustly. Conversely, synthetic biology approaches are instrumental in uncovering mechanisms underlying variability in natural systems. With a focus on reducing noise in individual genes, the field has established a broad synthetic toolset. This includes noise control by engineering of transcription and translation mechanisms either individually, or in combination to achieve independent regulation of mean expression and its variability. Synthetic feedback circuits use these components to establish more robust operation in closed-loop, either by drawing on, but also by extending traditional engineering concepts. In this perspective, we argue that major conceptual advances will require new theory of control adapted to biology, extensions from single genes to networks, more systematic considerations of origins of variability other than intrinsic noise, and an exploration of how noise shaping, instead of noise reduction, could establish new synthetic functions or help understanding natural functions.
© 2019 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  cell-to-cell variability; feedback control; stochastic noise; synthetic biological circuits

Mesh:

Year:  2019        PMID: 31803907     DOI: 10.1042/BST20190295

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  1 in total

1.  SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.

Authors:  Andreas Dräger; Tomáš Helikar; Matteo Barberis; Marc Birtwistle; Laurence Calzone; Claudine Chaouiya; Jan Hasenauer; Jonathan R Karr; Anna Niarakis; María Rodríguez Martínez; Julio Saez-Rodriguez; Juilee Thakar
Journal:  Bioinformatics       Date:  2021-06-24       Impact factor: 6.937

  1 in total

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