| Literature DB >> 31803784 |
Emre Ozan1, Harun Albayrak2, Semra Gumusova2, Cenk S Bolukbas3, Mithat Kurt2, Gokmen Z Pekmezci4, Yunus E Beyhan5, Hamza Kadi1, Selma Kaya1, Ismail Aydin1, Zafer Yazici2.
Abstract
BACKGROUND: Whether zoonotic or not, arboviral infections are continuing to be a major threat to human health as well as the livestock industry all around the world. This project presented the results of the identification study on five arboviruses, including West Nile virus (WNV), Bovine ephemeral fever virus, Akabane virus, Bluetongue virus, and Epizootic hemorrhagic disease virus, in mosquitos and midges from eight provinces of the Black Sea Region.Entities:
Keywords: Arbovirus; Identification; Midge; Mosquito; Real-time
Year: 2019 PMID: 31803784 PMCID: PMC6885145
Source DB: PubMed Journal: J Arthropod Borne Dis ISSN: 2322-1984 Impact factor: 1.198
Fig. 1.A map showing the provinces targetted in htis study for the capture of mosquitoes and biting-midges during 2011 and 2012. Provinces that indicated with numbers are 1: Sinop, 2: Samsun 3: Ordu, 4: Giresun, 5: Trabzon, 6: Rize, 7: Amasya, 8: Tokat
The numbers of captured insect species according to provinces where the traps were installed
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| ||||||
|---|---|---|---|---|---|---|
| 35.09 | 42.01 | Sinop | 19 | 540 | 158 | 27 |
| 36.20 | 41.17 | Samsun | 1372 | 195 | 168 | 44 |
| 36.43 | 40.19 | Amasya | 3 | 20 | 46 | 20 |
| 35.50 | 40.40 | Tokat | 23 | 136 | 181 | 35 |
| 37.53 | 41.00 | Ordu | 3 | 3 | 82 | 26 |
| 38.24 | 40.55 | Giresun | - | 4 | 35 | 2 |
| 39.43 | 41.00 | Trabzon | 5 | 4 | 60 | - |
| 40.31 | 41.02 | Rize | 2 | 3 | 7 | - |
Primers and Probes sequences that employ for this research
| WN3 NC-F | CAGACCACGCTACGGCG | 10,668–10,684 |
| WN3 NC-R | CTAGGGCCGCGTGGG | 10,770–10,756 |
| WN3 NC-P | TCTGCGGAGAGTGCAGTCTGCGAT | 10,691–10,714 |
| BTVrsa 291–311F | GCGTTCGAAGTTTACATCAAT | 291–311 |
| BTVrsa 387–357R | CAGTCATCTCTCTAGACACTCTATAATTACG | 387–357 |
| BTVuni 291–311F | GCTTTTGAGGTGTACGTGAAC | 291–311 |
| BTVuni 381–357R | TCTCCCTTGAAACTCTATAATTACG | 381–357 |
| BTV 341–320P | CGGATCAAGTTCACTCCACGGT | 341–320 |
| BTV 346–323P | TCCTCCGGATCAAGTTCACTCCAC | 346–323 |
| EHD 1/2F | GCGTTGGATATATTGGACAAAGC | 165–187 |
| EHD 1/2R | GCATACGAAGCATAAGCAACCTT | 275–253 |
| EHD 1/2P | TCAAATCAAACGGGCGCAACTATGG | 192–216 |
| EHD 3F | AGCCCTCGACATTCTGGATAAG | 164–185 |
| EHD 3R | CGCGACTTTCTCCACTTTTTG | 259–239 |
| EHD 3P | CAAATCAAACTGGTGCCACGATGGC | 206–230 |
| EHD 4F | AAGTTGCCCTCGATATCCTAGATAAG | 160–185 |
| EHD 4R | GTAAGCGACCTTTTCTACCTTTTGA | 266–242 |
| EHD 4P | CAATGTCTAACCAAACAGGCGCTACAATGG | 199–228 |
| EHD 5F | GCTGGATATACTCGACAAAGCAATG | 167–191 |
| EHD 5R | ACGCGACCTTTTCTACTTTTTGA | 262–240 |
| EHD 6F | GAGTCGCGCTGGATATACTC | 160–179 |
| EHD 6R | GCATATGATGCATACGCGACCTTT | 276–253 |
| EHD 7F | CAAAAGTTGCCCTTGACATTTTAG | 157–180 |
| EHD 7R | CATATGCTACTTTTTCTACCTTCTGC | 266–243 |
| EHD 8F | CCAAAAGTCGCCCTTGATATTT | 156–177 |
| EHD 8R | CATATGCCACTTTTTCTACCTTCTGC | 268–243 |
| AK151F | GCTAGAGTCTTCTTCCTCAACCAGAA | 151 |
| AK231R | AAAAGTAAGATCGACACTTGGTTGTG | 231 |
| AK182P | CCAAGATGGTCTTACATAAG | 182 |
| BEF346 F | TATTACCCTCCTGCCGGATGCTTT | 346–369 |
| BEF1155 R | AGGTCTGTATTCGCACCAAGCTCT | 1155-1132 |
Fig. 2.The amplication results of four arbovirus including WNA, BTV, EHDV and AKAV by a real time RT-PCR test. Curves indicated the real time PCR plots of positive controls. A:WNV, B:BTV, C: EHDV, and D:AKAV. A detectable fluorescence signals above the threshold for positive controls of four viruses occurred at 12 cycles for WNV, 28 cycles for BTV, 28 cycles for EHDV and 11 cycles for AKAV.As it seen in all figures, no positive pools for 4 viruses could be determined