| Literature DB >> 31803627 |
Meng Gao1, Chengyuan Li1, Han Xiao1, Hang Dong1, Siyi Jiang1, Yunfeng Fu1, Liying Gong1.
Abstract
Purpose: Circular RNA (circRNA) is a key regulatory factor in the development and progression of human tumors. However, the working mechanism and clinical significance of most circRNAs remain unknown in human cancers, including multiple myeloma (MM). Patients andEntities:
Keywords: biomarker; circular RNAs; diagnosis; multiple myeloma; prognosis
Year: 2019 PMID: 31803627 PMCID: PMC6877741 DOI: 10.3389/fonc.2019.01261
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Primers designed for qRT-PCR validation of candidate circRNAs.
| β-actin (human) | F: 5′ GTGGCCGAGGACTTTGATTG 3′ | 60 |
| R: 5′ CCTGTAACAACGCATCTCATATT 3′ | ||
| hsa_circ_0010402 | F: 5′ ACAAATCTGGCTCTGGCACC 3′ | 60 |
| R: 5′ GAGGTAGACAGATGAGACGCCA 3′ | ||
| hsa_circ_0004777 | F: 5′ CTGGACTTCAACCGAAATTTGA 3′ | 60 |
| R: 5′ GCTCCTCATGGACATCCTTTG 3′ | ||
| hsa_circ_0007841 | F: 5′ CTAACATCTGTGAAACCATCGT 3′ | 60 |
| R: 5′ TCATCACATACACGATAGACTGG 3′ | ||
| hsa_circ_0080212 | F: 5′ CTACCTGAGCCAGTTCTCCTAA 3′ | 60 |
| R: 5′ GGGTTCCTCATCGGTGTAAT 3′ |
Figure 1Overview of the microarray signatures. (A) Cluster analysis diagram of differentially expressed circRNAs. (B) The block diagram represents the normalized intensity of the two groups. (C) Volcano plot showing the significantly deregulated genes in MM samples. MM, multiple myeloma.
Figure 2Differentially expressed circRNAs. (A) Key circRNAs are circulated by exons. (B) qRT-PCR verification of four circRNAs in MM patients and controls. (C) Expression of hsa_circ_0007841 in the bone marrow of 86 MM patients and 30 controls. (D) Expression of hsa_circ_0007841 in bortezomib (BTZ) sensitive (N = 36) and bortezomib (BTZ) resistant (N = 21) patients. (E) Expression of hsa_circ_0007841 in MM patients, cell lines, and controls. MM, multiple myeloma; qRT-PCR, Real-time quantitative polymerase chain reaction. *P < 0.05, ****P < 0.01.
Correlations between the relative expression of hsa_circ_0007841 and clinicopathologic features in 86 MM patients.
| Age (year) | 0.524 | ||
| <60 | 48 | 9.895 ± 4.713 | |
| ≥60 | 38 | 9.453 ± 4.259 | |
| Sex | 0.289 | ||
| M | 53 | 10.118 ± 4.615 | |
| F | 33 | 9.060 ± 4.300 | |
| Isotype | 0.002 | ||
| lgG | 43 | 9.995 ± 4.763 | |
| lgA | 22 | 11.972 ± 4.047 | |
| Light chain | 12 | 7.147 ± 2.801 | |
| Unclassified | 9 | 6.144 ± 1.840 | |
| Cytogenetic abnormality | 0.025 | ||
| Yes | 57 | 10.428 ± 4.520 | |
| No | 29 | 8.269 ± 4.166 | |
| Percentage of myeloma cells in BM | 0.655 | ||
| ≥40% | 29 | 9.521 ± 4.460 | |
| <40% | 57 | 10.052 ± 4.630 | |
| Bone lesion | 0.014 | ||
| Yes | 79 | 10.043 ± 4.516 | |
| No | 7 | 5.826 ± 1.553 | |
| Renal inadequacy | 0.583 | ||
| Yes | 19 | 5.582 ± 4.564 | |
| No | 67 | 10.113 ± 4.348 | |
| Revised International Staging System | 0.000 | ||
| Stage 1 | 10 | 5.569 ± 1.457 | |
| Stage 2 | 37 | 8.087 ± 3.719 | |
| Stage 3 | 39 | 12.290 ± 4.211 |
MM, multiple myeloma; SD, standard deviation;
P < 0.05.
Figure 3The role of hsa_circ_0007841. (A) ROC curve for hsa_circ_0007841. (B) Kaplan-Meier survival curve for low and high expression of hsa_circ_0007841 in MM patients. MM, multiple myeloma; ROC curve, receiver operating characteristic curve.
Cytogenetic aberration status distribution between low/high hsa_circ_0007841 expression groups of MM patients.
| del (17p) | 0.721 | ||
| Positive | 30.2% (4/32) | 53.5% (5/54) | |
| Negative | 69.8% (28/32) | 46.5% (49/54) | |
| gain 1q21 | 0.039 | ||
| Positive | 34.4% (11/32) | 57.4% (31/54) | |
| Negative | 65.6% (21/32) | 32.6% (23/54) | |
| 0.025 | |||
| Positive | 6.3% (2/32) | 25.9% (14/54) | |
| Negative | 93.7% (30/32) | 74.1% (40/54) | |
| TP53 variants | 0.147 | ||
| Positive | 41.9% (1/32) | 32.6% (8/54) | |
| Negative | 58.1% (31/32) | 67.4% (46/54) | |
| ATR abnormalities | 0.048 | ||
| Positive | 3.1% (1/32) | 18.5% (10/54) | |
| Negative | 96.9% (31/32) | 81.5% (44/54) | |
| IRF4 variants | 0.042 | ||
| Positive | 6.3% (2/32) | 24.1% (13/54) | |
| Negative | 93.7% (30/32) | 75.9% (41/54) | |
MM, multiple myeloma;
P < 0.05.
Figure 4Functional analysis of circRNA. (A) hsa_circ_0007841-miRNA-mRNA co-expression network established using hsa_circ_0007841. (B) The GeneOntology_Fold Enrichment.