Literature DB >> 31794777

Deep learning improves automated rodent behavior recognition within a specific experimental setup.

Elsbeth A van Dam1, Lucas P J J Noldus2, Marcel A J van Gerven3.   

Abstract

Automated observation and analysis of rodent behavior is important to facilitate research progress in neuroscience and pharmacology. Available automated systems lack adaptivity and can benefit from advances in AI. In this work we compare a state-of-the-art conventional rat behavior recognition (RBR) system to an advanced deep learning method and evaluate its performance within and across experimental setups. We show that using a multi-fiber network (MF-Net) in conjunction with data augmentation strategies within-setup dataset performance improves over the conventional RBR system. Two new methods for video augmentation were used: video cutout and dynamic illumination change. However, we also show that improvements do not transfer to videos in different experimental setups, for which we discuss possible causes and cures.
Copyright © 2019 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Continuous video analysis; Cross-setup validation; Data augmentation; Deep learning; Rodent behavior recognition

Mesh:

Year:  2019        PMID: 31794777     DOI: 10.1016/j.jneumeth.2019.108536

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  6 in total

1.  DeepEthogram, a machine learning pipeline for supervised behavior classification from raw pixels.

Authors:  James P Bohnslav; Nivanthika K Wimalasena; Kelsey J Clausing; Yu Y Dai; David A Yarmolinsky; Tomás Cruz; Adam D Kashlan; M Eugenia Chiappe; Lauren L Orefice; Clifford J Woolf; Christopher D Harvey
Journal:  Elife       Date:  2021-09-02       Impact factor: 8.140

2.  Early Identification of Alzheimer's Disease in Mouse Models: Application of Deep Neural Network Algorithm to Cognitive Behavioral Parameters.

Authors:  Stephanie Sutoko; Akira Masuda; Akihiko Kandori; Hiroki Sasaguri; Takashi Saito; Takaomi C Saido; Tsukasa Funane
Journal:  iScience       Date:  2021-02-16

3.  Measuring Behavior in the Home Cage: Study Design, Applications, Challenges, and Perspectives.

Authors:  Fabrizio Grieco; Briana J Bernstein; Barbara Biemans; Lior Bikovski; C Joseph Burnett; Jesse D Cushman; Elsbeth A van Dam; Sydney A Fry; Bar Richmond-Hacham; Judith R Homberg; Martien J H Kas; Helmut W Kessels; Bastijn Koopmans; Michael J Krashes; Vaishnav Krishnan; Sreemathi Logan; Maarten Loos; Katharine E McCann; Qendresa Parduzi; Chaim G Pick; Thomas D Prevot; Gernot Riedel; Lianne Robinson; Mina Sadighi; August B Smit; William Sonntag; Reinko F Roelofs; Ruud A J Tegelenbosch; Lucas P J J Noldus
Journal:  Front Behav Neurosci       Date:  2021-09-24       Impact factor: 3.617

4.  Automated audiovisual behavior recognition in wild primates.

Authors:  Max Bain; Arsha Nagrani; Daniel Schofield; Sophie Berdugo; Joana Bessa; Jake Owen; Kimberley J Hockings; Tetsuro Matsuzawa; Misato Hayashi; Dora Biro; Susana Carvalho; Andrew Zisserman
Journal:  Sci Adv       Date:  2021-11-12       Impact factor: 14.136

Review 5.  Big behavior: challenges and opportunities in a new era of deep behavior profiling.

Authors:  Lukas von Ziegler; Oliver Sturman; Johannes Bohacek
Journal:  Neuropsychopharmacology       Date:  2020-06-29       Impact factor: 8.294

6.  Automated procedure to assess pup retrieval in laboratory mice.

Authors:  Carmen Winters; Wim Gorssen; Victoria A Ossorio-Salazar; Simon Nilsson; Sam Golden; Rudi D'Hooge
Journal:  Sci Rep       Date:  2022-01-31       Impact factor: 4.379

  6 in total

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