Literature DB >> 31792570

Chryseotalea sanaruensis gen. nov., sp., nov., a Member of the Family Cytophagaceae, Isolated from a Brackish Lake in Hamamatsu Japan.

Yoshiaki Maejima1, Takao Iino2, Yusuke Muraguchi1, Kohei Fukuda3, Moriya Ohkuma2, Tomohiro Suzuki4,5, Ryota Moriuchi4, Hideo Dohra4, Kazuhide Kimbara1, Masaki Shintani6,7,8,9.   

Abstract

A strain-designated YsT was isolated as a filterable bacterial strain from Lake Sanaru, a brackish water lake in Hamamatsu Japan. YsT is aerobic, Gram-negative, and slender rod shaped. YsT grew optimally at 30 °C, pH 7.0-8.0 and without the addition of NaCl. MK-7 was the sole isoprenoid quinone. The main cellular polar lipids were phosphatidylethanolamine and unidentified amino- and polar-lipids. The predominant cellular fatty acids were C18:0, iso-C14:0 and iso-C15:0. Phylogenetic analysis of 16S rRNA gene sequence revealed the nearest neighbours of strain YsT to be members of the Ohtaekwangia and Chryseolinea genera with 91.2-92.1% sequence similarity. The percentages of conserved proteins (POCP) between the genomes of YsT and related strains were less than 50%. Phenotypic analyses suggested that YsT could not metabolize glucose and related sugars, which was discriminative from its phylogenetic relatives. We, therefore, propose a novel species in a new genus, Chryseotalea sanaruensis gen. nov., sp. nov. in the family Cytophagaceae (= JCM 30318T = LMG 30359T), based on cell size, the predominant cellular fatty acid composition, and the DNA GC content (38.9 mol%).

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31792570     DOI: 10.1007/s00284-019-01823-4

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  14 in total

1.  Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis.

Authors:  S Turner; K M Pryer; V P Miao; J D Palmer
Journal:  J Eukaryot Microbiol       Date:  1999 Jul-Aug       Impact factor: 3.346

2.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

3.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

4.  Proteobacteria and Bacteroidetes are major phyla of filterable bacteria passing through 0.22 μm pore size membrane filter, in Lake Sanaru, Hamamatsu, Japan.

Authors:  Yoshiaki Maejima; Koya Kushimoto; Yusuke Muraguchi; Kohei Fukuda; Takamasa Miura; Atsushi Yamazoe; Kazuhide Kimbara; Masaki Shintani
Journal:  Biosci Biotechnol Biochem       Date:  2018-03-29       Impact factor: 2.043

5.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

6.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

7.  Identification of predominant human and animal anaerobic intestinal bacterial species by terminal restriction fragment patterns (TRFPs): a rapid, PCR-based method.

Authors:  A A Khan; M S Nawaz; L Robertson; S A Khan; C E Cerniglia
Journal:  Mol Cell Probes       Date:  2001-12       Impact factor: 2.365

8.  Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

Authors:  K Tamura; M Nei
Journal:  Mol Biol Evol       Date:  1993-05       Impact factor: 16.240

9.  Chryseolinea serpens gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil.

Authors:  Joong-Jae Kim; Mariam Alkawally; Allyson L Brady; W Irene C Rijpstra; Jaap S Sinninghe Damsté; Peter F Dunfield
Journal:  Int J Syst Evol Microbiol       Date:  2012-04-27       Impact factor: 2.747

10.  Chryseolinea flava sp. nov., a new species of Chryseolinea isolated from soil.

Authors:  Jing-Jing Wang; Qi Chen; Yue-Zhong Li
Journal:  Int J Syst Evol Microbiol       Date:  2018-09-17       Impact factor: 2.747

View more
  1 in total

1.  Four new members of the family Cytophagaceae: Chryseosolibacter histidini gen. nov., sp. nov., Chryseosolibacter indicus gen. nov., sp. nov., Dawidia cretensis, gen. nov., sp. nov., and Dawidia soli, gen. nov., sp. nov. isolated from diverse habitat.

Authors:  Senlie Octaviana; Stefan Lorenczyk; Frederike Ackert; Linda Fenske; Joachim Wink
Journal:  Antonie Van Leeuwenhoek       Date:  2022-06-22       Impact factor: 2.158

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.