Literature DB >> 31790579

Evolution of Bonding during the Insertion of Anionic Ibuprofen into Model Cell Membranes.

Natalia Rojas-Valencia1, Sara Gómez2, Sebastian Montillo1, Marcela Manrique-Moreno1, Chiara Cappelli2, Cacier Hadad1, Albeiro Restrepo1.   

Abstract

Descriptors of chemical bonding derived from five different analysis tools based on quantum mechanics (natural charges, electron density differences, atoms in molecules (AIM), natural bond orbitals (NBO), and non-covalent interactions (NCI) index) consistently afford a picture of a wall of weak, non-covalent intermolecular interactions separating anionic Ibuprofen from the environment. This wall, arising from the cumulative effect of a multitude of individual weak charge transfer interactions to the interstitial region between fragments, stabilizes the drug at all equilibrium positions in the free energy profile for its insertion into model cell membranes. The formal charge in anionic Ibuprofen strengthens all intermolecular interactions, having a particularly strong effect in the network of water to water hydrogen bonds in the solvent. Electron redistribution during the insertion process leads to a sensible reduction of electron delocalization in both the -CO2- group and the aromatic ring of Ibuprofen. Here, we conclusively show that, despite their purely classical origin, randomly chosen configurations from molecular dynamics simulations provide deep insight into the purely quantum nature of bonding interactions.

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Year:  2019        PMID: 31790579     DOI: 10.1021/acs.jpcb.9b09705

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  The Role of Spike Protein Mutations in the Infectious Power of SARS-COV-2 Variants: A Molecular Interaction Perspective.

Authors:  Santiago A Gómez; Natalia Rojas-Valencia; Sara Gómez; Chiara Cappelli; Albeiro Restrepo
Journal:  Chembiochem       Date:  2021-10-08       Impact factor: 3.461

2.  A molecular twist on hydrophobicity.

Authors:  Sara Gómez; Natalia Rojas-Valencia; Santiago A Gómez; Chiara Cappelli; Gabriel Merino; Albeiro Restrepo
Journal:  Chem Sci       Date:  2021-06-15       Impact factor: 9.825

3.  Structural Characterization, DFT Calculation, NCI, Scan-Rate Analysis and Antifungal Activity against Botrytis cinerea of (E)-2-{[(2-Aminopyridin-2-yl)imino]-methyl}-4,6-di-tert-butylphenol (Pyridine Schiff Base).

Authors:  Alexander Carreño; Dayán Páez-Hernández; Plinio Cantero-López; César Zúñiga; Jan Nevermann; Angélica Ramírez-Osorio; Manuel Gacitúa; Poldie Oyarzún; Felipe Sáez-Cortez; Rubén Polanco; Carolina Otero; Juan A A Fuentes
Journal:  Molecules       Date:  2020-06-13       Impact factor: 4.411

4.  Binding of SARS-CoV-2 to Cell Receptors: A Tale of Molecular Evolution.

Authors:  Santiago A Gómez; Natalia Rojas-Valencia; Sara Gómez; Franco Egidi; Chiara Cappelli; Albeiro Restrepo
Journal:  Chembiochem       Date:  2020-11-16       Impact factor: 3.461

5.  Ring Vibrations to Sense Anionic Ibuprofen in Aqueous Solution as Revealed by Resonance Raman.

Authors:  Sara Gómez; Natalia Rojas-Valencia; Tommaso Giovannini; Albeiro Restrepo; Chiara Cappelli
Journal:  Molecules       Date:  2022-01-10       Impact factor: 4.411

6.  Analysis of Conformational Preferences in Caffeine.

Authors:  Sara Gómez; Natalia Rojas-Valencia; Albeiro Restrepo
Journal:  Molecules       Date:  2022-03-17       Impact factor: 4.411

  6 in total

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