| Literature DB >> 31781532 |
Stephanie M Lim1, Robert Wever2, Suzan D Pas3, Gygliola Bonofacio2, Marion P G Koopmans3, Byron E E Martina1,3.
Abstract
Background: Zika virus (ZIKV) emerged in May 2015 in Brazil, from which it spread to many other countries in Latin America. Cases of ZIKV infection were eventually also reported in Curaçao (January 2016) and Bonaire (February 2016).Entities:
Keywords: Bonaire; Curaçao; Zika virus; epidemiology; laboratory; outbreak; qRT-PCR
Year: 2019 PMID: 31781532 PMCID: PMC6861455 DOI: 10.3389/fpubh.2019.00333
Source DB: PubMed Journal: Front Public Health ISSN: 2296-2565
Lab-developed qRT-PCR primers and probe used for diagnostics of ZIKV.
| ZIKV_1086 | CCGCTGCCCAACACAAG | 600 | Envelope | 77 | ( |
| ZIKV_1107 | FAM-AGCCTACCTTGACAAGCAGTCAGACACTCAA-BHQ1 | 100 | |||
| ZIKV_1162c | CCACTAACGTTCTTTTGCAGACAT | 600 | |||
| Zika2_fwd | CTTGGAGTGCTTGTGATT | 600 | NS2A | 187 | ( |
| Zika2_ probe | FAM-AGAAGAGAATGACCACAAAGATCA-BHQ1 | 100 | |||
| Zika2_rev | CTCCTCCAGTGTTCATTT | 600 | |||
| PDV fwd | CGGGTGCCTTTTACAAGAAC | 600 | Heamagglutinine | 78 | ( |
| PDV probe | Cy5-ATGCAAGGGCCAATT-MGB | 200 | |||
| PDV rev | TTCTTTCCTCAACCTCGTCC | 150 |
PDV, phocine distemper virus (internal control); BHQ, black hole quencher.
Number of samples collected and tested, and the number of patients tested in qRT-PCR during the ZIKV outbreak on Curaçao and Bonaire.
| No. of samples collected | 3,833 | 744 |
| No. of patients | 2,820 | 382 |
| No. of samples tested in qRT-PCR | 2,044 | 599 |
| No. of patients tested in qRT-PCR | 1,685 | 358 |
| No. of qRT-PCR positive samples | 815 | 129 |
| No. of qRT-PCR positive patients | 781 | 112 |
| No. of patients submitting paired samples for qRT-PCR | 324 | – |
| No. of patients testing qRT-PCR positive for first sample | 70 | – |
| No. of patients testing qRT-PCR positive for second sample | 32 | – |
| No. of patients submitting paired urine and serum samples | – | 262 |
| No. of patients submitting paired urine and serum samples for qRT-PCR | – | 183 |
| No. of patients testing qRT-PCR positive for urine only | – | 18 |
| No. of patients testing qRT-PCR positive for serum only | – | 17 |
| No. of patients testing qRT-PCR positive for both urine and serum | – | 13 |
| No. of patients testing qRT-PCR negative for both urine and serum | – | 135 |
Figure 1Amount of ZIKV RNA detected in the first and second ZIKV-positive urine samples of the paired samples submitted for testing by 32 individuals, expressed in terms of CT threshold 45 minus the CT determined for the sample.
Figure 2Absolute number of cases and prevalence of ZIKV-positive patients confirmed by qRT-PCR on Curaçao from mid-December 2015 to late April 2017 (A,B), and on Bonaire from mid-October 2016 to late April 2017 (C,D).
Prevalence per month of qRT-PCR-confirmed ZIKV-positive patients on Curaçao and Bonaire during the outbreak.
| 16-Dec-15 | 15 | 2 | 13 | |||
| Jan-16 | 66 | 3 | 5 | |||
| Feb-16 | 176 | 19 | 11 | |||
| Mar-16 | 104 | 20 | 19 | |||
| Apr-16 | 68 | 13 | 19 | |||
| May-16 | 66 | 24 | 36 | |||
| June-16 | 69 | 21 | 30 | |||
| July-16 | 56 | 13 | 23 | |||
| Aug-16 | 151 | 72 | 48 | |||
| Sept-16 | 172 | 78 | 45 | |||
| Oct-16 | 254 | 171 | 67 | 24 | 12 | 50 |
| Nov-16 | 311 | 247 | 79 | 141 | 66 | 47 |
| Dec-16 | 136 | 75 | 55 | 79 | 24 | 30 |
| Jan-17 | 21 | 15 | 71 | 45 | 8 | 18 |
| Feb-17 | 12 | 6 | 50 | 26 | 2 | 8 |
| Mar-17 | 7 | 2 | 29 | 31 | 0 | 0 |
| 26-Apr-17 | 1 | 0 | 0 | 12 | 0 | 0 |
For Bonaire samples were collected starting from 17-Oct-16.
Characteristics of the 781 patients confirmed by qRT-PCR for ZIKV infection on Curaçao between 16 December 2015 till 26 April 2017, and of the 112 patients confirmed on Bonaire between 17 October 2016 till 26 April 2017, according to sex and age [with use of population demographics data from July 2017 (www.indexmundi.com)].
| 149,648 | ||||
| 781 | ||||
| Female | 574 | 73.5 | 77,920 | 737 |
| Male | 207 | 26.5 | 71,728 | 289 |
| 0-14 | 70 | 9.0 | 29,935 | 234 |
| 15-24 | 67 | 8.6 | 21,450 | 312 |
| 25-54 | 476 | 60.9 | 55,181 | 863 |
| 55-64 | 106 | 13.6 | 20,482 | 518 |
| 65+ | 62 | 7.9 | 22,600 | 274 |
| 19,179 | ||||
| 112 | ||||
| Female | 81 | 72.3 | 9261 | 875 |
| Male | 31 | 27.7 | 9918 | 313 |
| 0-14 | 6 | 5.4 | 3,359 | 179 |
| 15-24 | 15 | 13.4 | 2,105 | 713 |
| 25-54 | 75 | 67.0 | 9,198 | 815 |
| 55-64 | 11 | 9.8 | 2,552 | 431 |
| 65+ | 5 | 4.5 | 2,194 | 228 |
Figure 3The locations of a selection of the patients on Curaçao that tested positive for ZIKV by qRT-PCR. The map was created by plotting the locations on www.mapcustomizer.com.