| Literature DB >> 31775841 |
Pan Ge1,2, Jian Zhang1, Liang Zhou3, Mo-Qi Lv1,2, Yi-Xin Li1,2, Jin Wang4,5, Dang-Xia Zhou6,7.
Abstract
BACKGROUND: Non-obstructive azoospermia (NOA) is a multifactorial disorder whose molecular basis remains largely unknown. Circular RNAs (CircRNAs), a novel class of endogenous RNAs, have been recognized to play important roles in many biological processes. However, little is known about the expression patterns and functions of circRNAs in human testes involved in NOA.Entities:
Keywords: Bioinformatics analyses; CircRNA; Microarray; Non-obstructive azoospermia (NOA); Spermatogenesis
Mesh:
Substances:
Year: 2019 PMID: 31775841 PMCID: PMC6880412 DOI: 10.1186/s12958-019-0541-4
Source DB: PubMed Journal: Reprod Biol Endocrinol ISSN: 1477-7827 Impact factor: 5.211
Primer sequences
| CircBase ID. | F/R | Primer Sequence | size (bp) |
|---|---|---|---|
| hsa_circ_0058058 | F | 5′-GCAGAGCTCCGAGAGTAAGG-3′ | 89 |
| R | 5′-AGGCCGGTTTTGTCAGAGAC-3′ | ||
| hsa_circ_0008045 | F | 5′-GAGCCAGGACAAGACTCTCAA-3′ | 97 |
| R | 5′-ATTCAGCAGTTGGATGCCGA-3′ | ||
| hsa_circ_0023313 | F | 5′-AAAACGCTACCTCGCTGCAC-3′ | 143 |
| R | 5′-GGCCTTCTGCTTCGCTGAT-3′ | ||
| hsa_circ_0061817 | F | 5′-ACTGGTGAGGAACATCCACG-3’ | 91 |
| R | 5′-AAGAACTGAATAGCCTGGCCC-3’ | ||
| hsa_circ_0002023 | F | 5′-CCAGCCCCAAAGAGTCAACTAA-3’ | 164 |
| R | 5′-TCCATCGAGAAGGTCCACGAA-3’ | ||
| hsa_circ_0008533 | F | 5′-CACACCTGGACAGTCAGTTTCT-3’ | 125 |
| R | 5′-ATCAGCTCCTCCAGCTCATCT-3’ | ||
| GADPH | F | 5′-GCACCGTCAAGGCTGAGAAC-3’ | 138 |
| R | 5′-TGGTGAAGACGCCAGTGGA-3’ |
Fig. 1Analysis of differentially expressed circRNA in testicular tissue of NOA patients. a Hierarchical clustering picture of all expressed circRNAs. “red color” represents high relative expression, and “green color” represents low relative expression. b Box plots show that the distributions of circRNAs in the control and NOA group samples were nearly the same after normalization. cThe scatter plots showed the variation of circRNA expression between the NOA and the control. The circRNAs in the located above the top green line and below the bottom green line indicated more than a 2.0-fold change of circRNAs. d The differentially expressed circRNAs based on the genomic origin were shown in the pie charts
Fig. 2Confirmation of circRNA microarray data by qRT-PCR. The qRT-PCR analysis confirmed the circRNA microarray data. Hsa_circ_0023313 (Control 1.30 ± 1.33, NOA 16.46 ± 2.81, P = 0.002), hsa_circ_0008045 (Control 1.00 ± 0.32, NOA 4.12 ± 0.51, P = 0.00035) and hsa_circ_0058058 (Control 0.98 ± 0.43, NOA 16.93 ± 1.48, P = 0.0004) were up-regulated. Hsa_circ_0061817 (Control 1.04 ± 0.24, NOA 0.58 ± 0.19, P = 0.061), hsa_circ_0002023 (Control 1.00 ± 0.29, NOA 0.46 ± 0.13, P = 0.01), and hsa_circ_0008533 (Control 0.99 ± 0.26, NOA 0.60 ± 0.16, P = 0.012) were down-regulated in NOA patients when compared with the control. (*P < 0.05, compared with the control)
Fig. 3Prediction of circRNA/miRNA interaction information of hsa_circRNA_0023313. The results of hsa_circRNA_0023313 bound to sites of hsa-miR-520d-3p, hsa-miR-373-3p, hsa-miR-372-3p, hsa-miR-302c-3p and hsa-miR-130b-5p in 3′-UTR
Fig. 4CircRNA/miRNA/mRNA interaction network diagram based on the predicted target genes of hsa_circRNA_0023313-targeting miRNAs. The yellow square in the center stands for the hsa_circRNA_0023313. The triangles in different color represent potential target miRNAs for hsa_circRNA_0023313. The different color round stands for the potential corresponding target genes (mRNA) of hsa_circRNA_0023313-targeting miRNAs
Fig. 5Go analysis and KEGG pathway analysis for has_circ_0023313. a Cellular component analysis for has_circ_0023313 targeting genes; b Biological process analysis for has_circ_0023313 targeting genes; c Molecular function analysis for has_circ_0023313 targeting genes; d KEGG pathway analysis for has_circ_0023313