Literature DB >> 31768897

Crowdsourcing pneumothorax annotations using machine learning annotations on the NIH chest X-ray dataset.

Ross W Filice1, Anouk Stein2, Carol C Wu3, Veronica A Arteaga4, Stephen Borstelmann5, Ramya Gaddikeri6, Maya Galperin-Aizenberg7, Ritu R Gill8, Myrna C Godoy3, Stephen B Hobbs9, Jean Jeudy10, Paras C Lakhani11, Archana Laroia12, Sundeep M Nayak13, Maansi R Parekh11, Prasanth Prasanna14, Palmi Shah6, Dharshan Vummidi15, Kavitha Yaddanapudi4, George Shih16.   

Abstract

Pneumothorax is a potentially life-threatening condition that requires prompt recognition and often urgent intervention. In the ICU setting, large numbers of chest radiographs are performed and must be interpreted on a daily basis which may delay diagnosis of this entity. Development of artificial intelligence (AI) techniques to detect pneumothorax could help expedite detection as well as localize and potentially quantify pneumothorax. Open image analysis competitions are useful in advancing state-of-the art AI algorithms but generally require large expert annotated datasets. We have annotated and adjudicated a large dataset of chest radiographs to be made public with the goal of sparking innovation in this space. Because of the cumbersome and time-consuming nature of image labeling, we explored the value of using AI models to generate annotations for review. Utilization of this machine learning annotation (MLA) technique appeared to expedite our annotation process with relatively high sensitivity at the expense of specificity. Further research is required to confirm and better characterize the value of MLAs. Our adjudicated dataset is now available for public consumption in the form of a challenge.

Keywords:  Artificial intelligence; Challenge; Chest radiograph; Machine learning annotations; Pneumothorax; Public datasets

Year:  2020        PMID: 31768897      PMCID: PMC7165201          DOI: 10.1007/s10278-019-00299-9

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  6 in total

Review 1.  Pneumothorax in the critically ill patient.

Authors:  Lonny Yarmus; David Feller-Kopman
Journal:  Chest       Date:  2012-04       Impact factor: 9.410

2.  Snorkel DryBell: A Case Study in Deploying Weak Supervision at Industrial Scale.

Authors:  Stephen H Bach; Daniel Rodriguez; Yintao Liu; Chong Luo; Haidong Shao; Cassandra Xia; Souvik Sen; Alex Ratner; Braden Hancock; Houman Alborzi; Rahul Kuchhal; Chris Ré; Rob Malkin
Journal:  Proc ACM SIGMOD Int Conf Manag Data       Date:  2019 Jun-Jul

3.  Machine Learning in Radiology: Applications Beyond Image Interpretation.

Authors:  Paras Lakhani; Adam B Prater; R Kent Hutson; Kathy P Andriole; Keith J Dreyer; Jose Morey; Luciano M Prevedello; Toshi J Clark; J Raymond Geis; Jason N Itri; C Matthew Hawkins
Journal:  J Am Coll Radiol       Date:  2017-11-17       Impact factor: 5.532

4.  Epidemiology of pneumothorax in England.

Authors:  D Gupta; A Hansell; T Nichols; T Duong; J G Ayres; D Strachan
Journal:  Thorax       Date:  2000-08       Impact factor: 9.139

5.  Primary and Secondary Spontaneous Pneumothorax: Prevalence, Clinical Features, and In-Hospital Mortality.

Authors:  Takuya Onuki; Sho Ueda; Masatoshi Yamaoka; Yoshiaki Sekiya; Hitoshi Yamada; Naoki Kawakami; Yuichi Araki; Yoko Wakai; Kazuhito Saito; Masaharu Inagaki; Naoki Matsumiya
Journal:  Can Respir J       Date:  2017-03-13       Impact factor: 2.409

6.  The RSNA Pediatric Bone Age Machine Learning Challenge.

Authors:  Safwan S Halabi; Luciano M Prevedello; Jayashree Kalpathy-Cramer; Artem B Mamonov; Alexander Bilbily; Mark Cicero; Ian Pan; Lucas Araújo Pereira; Rafael Teixeira Sousa; Nitamar Abdala; Felipe Campos Kitamura; Hans H Thodberg; Leon Chen; George Shih; Katherine Andriole; Marc D Kohli; Bradley J Erickson; Adam E Flanders
Journal:  Radiology       Date:  2018-11-27       Impact factor: 29.146

  6 in total
  6 in total

1.  Chest L-Transformer: Local Features With Position Attention for Weakly Supervised Chest Radiograph Segmentation and Classification.

Authors:  Hong Gu; Hongyu Wang; Pan Qin; Jia Wang
Journal:  Front Med (Lausanne)       Date:  2022-06-02

2.  Review on COVID-19 diagnosis models based on machine learning and deep learning approaches.

Authors:  Zaid Abdi Alkareem Alyasseri; Mohammed Azmi Al-Betar; Iyad Abu Doush; Mohammed A Awadallah; Ammar Kamal Abasi; Sharif Naser Makhadmeh; Osama Ahmad Alomari; Karrar Hameed Abdulkareem; Afzan Adam; Robertas Damasevicius; Mazin Abed Mohammed; Raed Abu Zitar
Journal:  Expert Syst       Date:  2021-07-28       Impact factor: 2.812

3.  U-shaped GAN for Semi-Supervised Learning and Unsupervised Domain Adaptation in High Resolution Chest Radiograph Segmentation.

Authors:  Hongyu Wang; Hong Gu; Pan Qin; Jia Wang
Journal:  Front Med (Lausanne)       Date:  2022-01-13

4.  Pneumothorax detection in chest radiographs: optimizing artificial intelligence system for accuracy and confounding bias reduction using in-image annotations in algorithm training.

Authors:  Johannes Rueckel; Christian Huemmer; Andreas Fieselmann; Florin-Cristian Ghesu; Awais Mansoor; Balthasar Schachtner; Philipp Wesp; Lena Trappmann; Basel Munawwar; Jens Ricke; Michael Ingrisch; Bastian O Sabel
Journal:  Eur Radiol       Date:  2021-03-27       Impact factor: 5.315

5.  The 2021 SIIM-FISABIO-RSNA Machine Learning COVID-19 Challenge: Annotation and Standard Exam Classification of COVID-19 Chest Radiographs.

Authors:  Paras Lakhani; J Mongan; C Singhal; Q Zhou; K P Andriole; W F Auffermann; P M Prasanna; T X Pham; Michael Peterson; P J Bergquist; T S Cook; S F Ferraciolli; G C A Corradi; M S Takahashi; C S Workman; M Parekh; S I Kamel; J Galant; A Mas-Sanchez; E C Benítez; M Sánchez-Valverde; L Jaques; M Panadero; M Vidal; M Culiañez-Casas; D Angulo-Gonzalez; S G Langer; María de la Iglesia-Vayá; G Shih
Journal:  J Digit Imaging       Date:  2022-09-28       Impact factor: 4.903

6.  Detection of the location of pneumothorax in chest X-rays using small artificial neural networks and a simple training process.

Authors:  Yongil Cho; Jong Soo Kim; Tae Ho Lim; Inhye Lee; Jongbong Choi
Journal:  Sci Rep       Date:  2021-06-22       Impact factor: 4.379

  6 in total

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