Literature DB >> 31768651

Effect of starch/CNT on biodesulfurization using molecular dynamic simulation.

Soltan Sabaghian1, Behnam Rasekh2, Fatemeh Yazdian3, Marziyeh Shekarriz4, Nabiallah Mansouri1.   

Abstract

Nowadays, fossil fuel is the most important source of energy. However, the sulfur oxide release through oxidation of the available sulfur and the resultant air pollution has turned into an issue. In biodesulfurization (BDS) process, the sulfur from the recalcitrant organic compounds dissolved in crude oil fractions will be removed biologically. Carbon nanotubes (CNTs) exhibit good catalytic performance in dibenzothiophene (DBT) oxidation. Molecular dynamic simulation is the best and the only way to reach this end. Through this study, molecular dynamic simulations are applied to compute the effects of starch/CNTs on BDS process of DBT during 5 ns. The changes of cell length, energy, dynamic temperature, relative concentration of DBT, and radial distribution function (RDF) in the absence and presence of starch/CNTs were investigated. Regarding to the energy diagram, the fluctuation because of temperature fluctuations reaches the stable state. The high level of the first peak in RDF diagram showed the high and long desulfurization by microorganism. All the results showed stable and reasonable equilibrium state of the system. According to the graphs, the simultaneous in the presence of starch/CNT and Rhodococcus erythropolis increase the removal efficiency of nitrate reached 85% and in the absence of nanoparticle was 35.44%.

Entities:  

Keywords:  Biodesulfurization; Dibenzothiophene; Molecular dynamic simulations; Nanoparticle; Starch/CNT

Year:  2019        PMID: 31768651     DOI: 10.1007/s00894-019-4236-8

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  9 in total

1.  Are current molecular dynamics force fields too helical?

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Journal:  Biophys J       Date:  2008-05-02       Impact factor: 4.033

2.  Unusually high thermal conductivity of carbon nanotubes

Authors: 
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3.  Effect of zero-valent iron/starch nanoparticle on nitrate removal using MD simulation.

Authors:  Soheil Rezazadeh Mofradnia; Reihaneh Ashouri; Zahra Tavakoli; Fereshteh Shahmoradi; Hamid Rashedi; Fatemeh Yazdian; Javad Tavakoli
Journal:  Int J Biol Macromol       Date:  2018-10-04       Impact factor: 6.953

Review 4.  Current state-of-the-art molecular dynamics methods and applications.

Authors:  Dimitrios Vlachakis; Elena Bencurova; Nikitas Papangelopoulos; Sophia Kossida
Journal:  Adv Protein Chem Struct Biol       Date:  2014       Impact factor: 3.507

5.  Molecular dynamic of curcumin/chitosan interaction using a computational molecular approach: Emphasis on biofilm reduction.

Authors:  Azam Khezri; Arsalan Karimi; Fatemeh Yazdian; Mahmoud Jokar; Soheil Rezazadeh Mofradnia; Hamid Rashedi; Zahra Tavakoli
Journal:  Int J Biol Macromol       Date:  2018-03-20       Impact factor: 6.953

6.  Fe/starch nanoparticle - Pseudomonas aeruginosa: Bio-physiochemical and MD studies.

Authors:  Soheil Rezazadeh Mofradnia; Zahra Tavakoli; Fatemeh Yazdian; Hamid Rashedi; Behnam Rasekh
Journal:  Int J Biol Macromol       Date:  2018-05-04       Impact factor: 6.953

7.  Curcumin-loaded polysaccharide nanoparticles: Optimization and anticariogenic activity against Streptococcus mutans.

Authors:  Amir Maghsoudi; Fatemeh Yazdian; Saleheh Shahmoradi; Leila Ghaderi; Mehran Hemati; Ghassem Amoabediny
Journal:  Mater Sci Eng C Mater Biol Appl       Date:  2017-03-07       Impact factor: 7.328

8.  Molecular dynamics studies of polysaccharide carrier based on starch in dental cavities.

Authors:  Nazli Rezapour; Behnam Rasekh; Soheil Rezazadeh Mofradnia; Fatemeh Yazdian; Hamid Rashedi; Zahra Tavakoli
Journal:  Int J Biol Macromol       Date:  2018-10-09       Impact factor: 6.953

9.  Effects of Fe/SDS and Au nanoparticles on P. aeruginosa bacterial growth and biosurfactant production.

Authors:  Neda Alamdar; Behnam Rasekh; Fatemeh Yazdian
Journal:  IET Nanobiotechnol       Date:  2018-06       Impact factor: 1.847

  9 in total

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