| Literature DB >> 31768104 |
Jianhong Xing1,2, Dezhuo Pan1, Lingxia Wang3, Fanglin Tan4, Wei Chen1.
Abstract
Kandelia candel is one of the mangrove species that are most resistant to environmental stress. As a typical nonsalt-secreting mangrove plant, K. candel is an ideal biological material to analyze the molecular mechanism of salt tolerance in woody plants. In this study, changes in protein abundance and expression profile in K. candel roots under high-salinity stress of 600 mmol L-1 NaCl were analyzed using isobaric tags for relative and absolute quantification (iTRAQ) assay. Moreover, the physiological parameters associated with metabolic pathways in which the differentially abundant proteins (DAPs) are involved were determined. A total of 5577 proteins were identified by iTRAQ analysis of the K. candel root proteins, of which 227 were DAPs with a fold change ratio >1.2 or a fold change ratio <0.83 and a P-value <0.05. A total of 227 DAPs consisting of 110 up-regulated and 117 down-regulated proteins were identified. Our Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses revealed that the DAPs were primarily involved in biological processes including carbohydrate and energy metabolisms, stress response and defense, cell wall structure, and secondary metabolism. The results of the physiological parameters showed that their profile changes were consistent with those of the proteome analysis. The results of the proteome and physiological parameters showed that K. candel roots could resist high-salinity stress by maintaining a normal Embden-Meyerhof-Parnas and tricarboxylic acid (EMP-TCA) pathway, increasing the activities of various antioxidant enzymes and antioxidant contents, stabilizing the cell wall structure, and accumulating secondary metabolites such as triterpenoids.Entities:
Keywords: antioxidation; energy metabolism; triterpenoids; Proteome; cell wall
Year: 2019 PMID: 31768104 PMCID: PMC6823913 DOI: 10.3906/biy-1906-22
Source DB: PubMed Journal: Turk J Biol ISSN: 1300-0152
Some key differentially abundant proteins from iTRAQ result in K. candel roots under high-salinity stress.
| Accession | Protein name | Coverage/% | MW/kDa | pI | UP | average 600 mM/0 mM | t-test P-value |
| Carbohydrate and energy metabolism | |||||||
| comp19949_c0 | UDP-d-glucose 4-epimerase 1 | 34.2 | 38.9 | 7.14 | 9 | 1.331 | 0.020 |
| comp15041_c0 | 6-phosphofructokinase 3 | 17.0 | 61.3 | 7.08 | 5 | 1.736 | 0.011 |
| CL13463Contig1 | Fructokinase 2 | 25.9 | 41.4 | 6.37 | 5 | 1.297 | 0.014 |
| CL12703Contig1 | Pyruvate kinase isozyme A | 19.0 | 63.5 | 5.91 | 8 | 1.303 | 0.010 |
| CL3374Contig1 | Pyruvate decarboxylase 2 | 22.0 | 65.1 | 6.28 | 9 | 1.799 | 0.011 |
| CL336Contig2 | Pyruvate dehydrogenase kinase isoform 1 | 32.1 | 41.6 | 6.47 | 8 | 1.520 | 0.021 |
| CL8767.Contig2_All | Malate dehydrogenase, mitochondrial (Precursor) | 59.9 | 36.0 | 8.18 | 7 | 1.219 | 0.012 |
| CL362Contig2 | ATP-citrate synthase | 30.3 | 46.7 | 5.57 | 7 | 1.447 | 0.007 |
| CL4267.Contig4_All | Aconitate hydratase 2 | 41.6 | 109.0 | 7.17 | 9 | 1.548 | 0.015 |
| Unigene3760_All | Phosphoglycerate kinase | 66.9 | 18.5 | 4.77 | 6 | 1.288 | 0.021 |
| CL10577Contig1 | Isocitrate dehydrogenase | 51.0 | 46.9 | 7.97 | 9 | 1.204 | 0.010 |
| Unigene16086_All | Succinate dehydrogenase 5 | 40.5 | 26.5 | 6.14 | 6 | 1.351 | 0.012 |
| CL8363.Contig1_All | Cytochrome c oxidase subunit 6b-1-like | 15.5 | 21.5 | 4.35 | 3 | 1.204 | 0.037 |
| Secondary metabolism | |||||||
| comp22281_c0 | 1-deoxy-d-xylulose-5-phosphate | 3.5 | 78.0 | 7.36 | 1 | 2.016 | 0.021 |
| CL8869Contig1 | 2-c-methyl-d-erythritol -cyclodiphosphate synthase | 21.5 | 25.8 | 8.57 | 4 | 1.219 | 0.004 |
| comp21082_c0 | Flavonoid o-methyltransferase related | 8.0 | 40.1 | 6.58 | 2 | 1.286 | 0.001 |
| CL773.Contig6_All | 2-oxoglutarate fe -dependent dioxygenase-like | 11.2 | 10.8 | 8.85 | 1 | 1.643 | 0.028 |
| CL5146Contig1 | Trehalose-phosphate synthase | 10.4 | 96.6 | 6.35 | 4 | 1.232 | 0.002 |
| comp30356_c0 | Anthocyanidin synthase | 7.3 | 10.9 | 7.37 | 1 | 0.732 | 0.049 |
| CL11481Contig1 | Chalcone synthase | 20.8 | 42.4 | 6.80 | 1 | 0.819 | 0.003 |
| comp7691_c0 | S-adenosylmethionine-dependent methyltransferase | 16.7 | 26.2 | 6.55 | 3 | 1.366 | 0.006 |
| CL10439Contig1 | Myo-inositol oxygenase | 22.2 | 36.5 | 5.30 | 7 | 1.314 | 0.015 |
| CL7327.Contig2_All | Dihydroneopterin aldolase-like isoform 1 | 18.8 | 14.9 | 7.68 | 1 | 1.336 | 0.020 |
| comp5773_c0 | Polyphenol oxidase | 39.9 | 66.7 | 7.24 | 19 | 1.303 | 0.006 |
| comp20983_c0 | Caffeic acid 3-o-methyltransferase | 15.8 | 40.2 | 5.71 | 4 | 0.781 | 0.008 |
| Stress response and defense | |||||||
| comp19686_c0 | Cationic peroxidase 2 | 43.7 | 36.7 | 8.63 | 12 | 1.695 | 0.004 |
| comp6524_c0 | Peroxidase 52-like | 46.1 | 33.9 | 9.58 | 11 | 1.436 | 0.041 |
| CL3111Contig1 | Peroxidase superfamily protein | 52.1 | 36.2 | 9.72 | 12 | 1.894 | 0.002 |
| CL10686Contig1 | Peroxidase superfamily protein | 27.1 | 34.8 | 9.35 | 6 | 1.292 | 0.010 |
| CL12322Contig1 | Peroxidase 47-like | 12.3 | 34.4 | 5.77 | 3 | 0.793 | 0.036 |
| CL91Contig2 | Catalase family protein | 43.5 | 56.9 | 7.40 | 13 | 1.202 | 0.006 |
| Unigene1381_All | Tau class glutathione transferase gstu52 | 21.9 | 17.6 | 9.11 | 3 | 1.247 | 0.041 |
| comp6225_c0 | Glutathione-disulfide reductase isoform 1 | 51.9 | 53.5 | 6.37 | 19 | 1.219 | 0.006 |
| comp6062_c0 | OAS-tl3 cysteine synthase | 37.9 | 40.3 | 8.56 | 11 | 1.246 | 0.011 |
| CL6431.Contig1_All | Cysteine proteinase | 69.6 | 12.6 | 5.57 | 10 | 1.447 | 0.020 |
| Unigene17872_All | ATP sulfurylase | 21.2 | 51.6 | 8.53 | 1 | 1.398 | 0.010 |
| Unigene4466_All | S-adenosylmethioninesynthetase | 58.3 | 43.0 | 6.05 | 1 | 0.710 | 0.007 |
| CL1465Contig1 | heat shock protein | 18.1 | 18.4 | 5.74 | 1 | 1.231 | 0.011 |
| Cell wall and others | |||||||
| comp5806_c0 | Pectinesterase inhibitor 6-like | 14.7 | 58.1 | 7.69 | 6 | 1.432 | 0.010 |
| CL5352.Contig2_All | Pectate lyase 15-like | 5.7 | 27.2 | 5.99 | 1 | 0.821 | 0.022 |
| comp10840_c0 | Pectin methylesterase family protein | 18.0 | 57.2 | 9.41 | 8 | 0.685 | 0.035 |
| Unigene2986_All | Xyloglucan endo-transglucosylase hydrolase protein 22 | 17.4 | 32.2 | 7.77 | 4 | 0.793 | 0.021 |
| CL11183Contig1 | Endochitinase pr4 | 38.2 | 28.6 | 7.64 | 9 | 1.792 | 0.021 |
Accession: Database accession numbers according to transcriptome. Coverage: Percent sequence coverage of identified proteins. MW: Theoretical mass (kDa) of identified proteins. pI: pIof identified proteins. UP: Number of unique peptides identified for each protein. average 600 mM/0 mM: average protein abundance of 600 mmol L-1 NaCl group vs. 0 mmol L-1 NaCl group.